FFCP PHASE1:Hg19::chr1:245133673..245133720,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:245133673..245133720,+ to FFCP PHASE1:Hg19::chr1:245133673..245133720,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84288 | |EntrezGene=84288 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28166 | |HGNC=28166 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000487845,ENST00000549220_5end | |||
|cluster_id=chr1:245133673..245133720,+ | |||
|description=CAGE_peak_1_at_EFCAB2_5end | |||
|id=chr1:245133673..245133720,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.29e-09;29 | |||
|ontology_enrichment_disease=DOID:162!1.94e-11!235;DOID:14566!1.96e-11!239;DOID:305!9.75e-09!106;DOID:0050687!2.77e-07!143;DOID:8692!6.76e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;6.49e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.28e-11,235;DOID:14566,2.30e-11,239;DOID:305,1.02e-08,106;DOID:0050687,2.97e-07,143;DOID:8692,6.56e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.84e-15!115;UBERON:0001017!2.45e-10!82;UBERON:0001049!2.90e-10!57;UBERON:0005068!2.90e-10!57;UBERON:0006241!2.90e-10!57;UBERON:0007135!2.90e-10!57;UBERON:0000073!8.28e-10!94;UBERON:0001016!8.28e-10!94;UBERON:0005743!1.48e-09!86;UBERON:0002780!8.28e-09!41;UBERON:0001890!8.28e-09!41;UBERON:0006240!8.28e-09!41;UBERON:0000955!1.31e-08!69;UBERON:0006238!1.31e-08!69;UBERON:0002616!3.14e-08!59;UBERON:0003080!4.11e-08!42;UBERON:0003075!1.38e-07!86;UBERON:0007284!1.38e-07!86;UBERON:0001737!7.50e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.21e-07;41!UBERON:0001890;6.21e-07;41!UBERON:0000073;6.34e-07;53!UBERON:0002616;6.34e-07;53!UBERON:0001737;6.82e-07;9!UBERON:0001557;6.82e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.56e-15,114;UBERON:0001016,4.52e-11,89;UBERON:0001049,6.00e-11,56;UBERON:0005068,6.00e-11,56;UBERON:0006241,6.00e-11,56;UBERON:0007135,6.00e-11,56;UBERON:0001017,6.95e-11,81;UBERON:0000073,3.68e-10,53;UBERON:0002616,3.68e-10,53;UBERON:0000955,3.84e-09,68;UBERON:0006238,3.84e-09,68;UBERON:0002780,8.26e-09,41;UBERON:0001890,8.26e-09,41;UBERON:0003080,8.26e-09,41;UBERON:0006240,8.26e-09,41;UBERON:0003075,3.68e-08,82;UBERON:0007284,3.68e-08,82;UBERON:0011216,2.60e-07,223;UBERON:0001737,7.48e-07,9 | |||
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| ||
|short_description=p1@EFCAB2 | |||
}} | }} |
Latest revision as of 21:32, 16 September 2015
Short description: | p1@EFCAB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EFCAB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000487845, ENST00000549220_5end |
EntrezGene: | EFCAB2 |
HGNC: | 28166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.56e-15 | 114 |
nervous system | 4.52e-11 | 89 |
neural tube | 6.00e-11 | 56 |
neural rod | 6.00e-11 | 56 |
future spinal cord | 6.00e-11 | 56 |
neural keel | 6.00e-11 | 56 |
central nervous system | 6.95e-11 | 81 |
regional part of nervous system | 3.68e-10 | 53 |
regional part of brain | 3.68e-10 | 53 |
brain | 3.84e-09 | 68 |
future brain | 3.84e-09 | 68 |
regional part of forebrain | 8.26e-09 | 41 |
forebrain | 8.26e-09 | 41 |
anterior neural tube | 8.26e-09 | 41 |
future forebrain | 8.26e-09 | 41 |
neural plate | 3.68e-08 | 82 |
presumptive neural plate | 3.68e-08 | 82 |
organ system subdivision | 2.60e-07 | 223 |
larynx | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.28e-11 | 235 |
disease of cellular proliferation | 2.30e-11 | 239 |
carcinoma | 1.02e-08 | 106 |
cell type cancer | 2.97e-07 | 143 |
myeloid leukemia | 6.56e-07 | 31 |