FFCP PHASE1:Hg19::chr15:101459149..101459160,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79705 | |EntrezGene=79705 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18608 | |HGNC=18608 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-259bp_to_ENST00000388948_5end | |association_with_transcript=-259bp_to_ENST00000388948_5end | ||
|cluster_id=chr15:101459149..101459160,+ | |||
|coexpression_cluster_id=C210 | |||
|description=CAGE_peak_7_at_LRRK1_5end | |description=CAGE_peak_7_at_LRRK1_5end | ||
|id=chr15:101459149..101459160,+ | |id=chr15:101459149..101459160,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.14e-27;24!CL:0000946;2.97e-19;1!CL:0000786;2.97e-19;1!CL:0000542;8.39e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.03e-27,24;CL:0000826,6.03e-27,24;CL:0000946,2.71e-19,1;CL:0000786,2.71e-19,1;CL:0000980,2.71e-19,1;CL:0000838,2.08e-12,52;CL:0000542,3.59e-12,53;CL:0000051,3.59e-12,53;CL:0000785,2.49e-10,2;CL:0000955,2.49e-10,2;CL:0000818,2.49e-10,2;CL:0000954,2.49e-10,2;CL:0000816,2.49e-10,2;CL:0000817,2.63e-07,3;CL:0002087,2.75e-07,115;CL:0002031,5.73e-07,120 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.97e-19;1!CL:0000954;2.60e-10;2!CL:0000051;8.39e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.59e-17;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.59e-17,10 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.97e-19;1!UBERON:0001153;2.97e-19;1!UBERON:0009854;2.97e-19;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,2.25e-19,1;UBERON:0001153,2.25e-19,1;UBERON:0001045,2.25e-19,1 | |||
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| ||
|short_description=p7@LRRK1 | |short_description=p7@LRRK1 | ||
}} | }} |
Latest revision as of 22:20, 16 September 2015
Short description: | p7@LRRK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LRRK1_5end |
Coexpression cluster: | C210_Burkitt_lymphoma_appendix_acute_diffuse_CD19_tonsil |
Association with transcript: | -259bp_to_ENST00000388948_5end |
EntrezGene: | LRRK1 |
HGNC: | 18608 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.03e-27 | 24 |
pro-B cell | 6.03e-27 | 24 |
antibody secreting cell | 2.71e-19 | 1 |
plasma cell | 2.71e-19 | 1 |
plasmablast | 2.71e-19 | 1 |
lymphoid lineage restricted progenitor cell | 2.08e-12 | 52 |
lymphocyte | 3.59e-12 | 53 |
common lymphoid progenitor | 3.59e-12 | 53 |
mature B cell | 2.49e-10 | 2 |
pre-B-II cell | 2.49e-10 | 2 |
transitional stage B cell | 2.49e-10 | 2 |
small pre-B-II cell | 2.49e-10 | 2 |
immature B cell | 2.49e-10 | 2 |
precursor B cell | 2.63e-07 | 3 |
nongranular leukocyte | 2.75e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 5.73e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 2.25e-19 | 1 |
caecum | 2.25e-19 | 1 |
midgut | 2.25e-19 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.59e-17 | 10 |