FFCP PHASE1:Hg19::chr2:32490859..32490889,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58484 | |EntrezGene=58484 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16412 | |HGNC=16412 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NPP4 | |UniProt=Q9NPP4 | ||
|association_with_transcript=33bp_to_ENST00000404025_5end | |association_with_transcript=33bp_to_ENST00000404025_5end | ||
|cluster_id=chr2:32490859..32490889,- | |||
|coexpression_cluster_id=C3875 | |coexpression_cluster_id=C3875 | ||
|description=CAGE_peak_2_at_NLRC4_5end | |description=CAGE_peak_2_at_NLRC4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002194!9.89e-60!63;CL:0000576!9.89e-60!63;CL:0000040!9.89e-60!63;CL:0000559!9.89e-60!63;CL:0002057!3.50e-59!42;CL:0000766!5.04e-59!76;CL:0002009!1.93e-57!65;CL:0000860!2.24e-54!45;CL:0000839!2.78e-52!70;CL:0000557!2.45e-51!71;CL:0000763!9.73e-40!112;CL:0000049!9.73e-40!112;CL:0002087!4.54e-36!119;CL:0000738!2.95e-35!140;CL:0002031!1.23e-29!124;CL:0000037!7.22e-29!172;CL:0000566!7.22e-29!172;CL:0002032!3.22e-27!165;CL:0000837!3.22e-27!165;CL:0000988!2.85e-26!182;CL:0002393!8.52e-14!9;CL:0002397!8.52e-14!9;CL:0000875!2.76e-07!3;CL:0002396!2.76e-07!3;CL:0000235!4.15e-07!10 | |ontology_enrichment_celltype=CL:0002194!9.89e-60!63;CL:0000576!9.89e-60!63;CL:0000040!9.89e-60!63;CL:0000559!9.89e-60!63;CL:0002057!3.50e-59!42;CL:0000766!5.04e-59!76;CL:0002009!1.93e-57!65;CL:0000860!2.24e-54!45;CL:0000839!2.78e-52!70;CL:0000557!2.45e-51!71;CL:0000763!9.73e-40!112;CL:0000049!9.73e-40!112;CL:0002087!4.54e-36!119;CL:0000738!2.95e-35!140;CL:0002031!1.23e-29!124;CL:0000037!7.22e-29!172;CL:0000566!7.22e-29!172;CL:0002032!3.22e-27!165;CL:0000837!3.22e-27!165;CL:0000988!2.85e-26!182;CL:0002393!8.52e-14!9;CL:0002397!8.52e-14!9;CL:0000875!2.76e-07!3;CL:0002396!2.76e-07!3;CL:0000235!4.15e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.16e-42;39!CL:0000234;2.16e-42;39!CL:0000576;2.58e-37;48!CL:0000860;1.05e-33;33!CL:0002057;1.05e-33;33!CL:0000766;2.72e-30;69!CL:0000235;5.91e-25;6!CL:0000763;2.14e-19;100!CL:0000875;7.70e-14;3!CL:0002396;7.70e-14;3!CL:0002619;1.39e-12;3!CL:0002087;1.41e-11;104!CL:0000738;6.38e-09;136!CL:0002393;4.91e-07;6!CL:0002397;4.91e-07;6 | |ontology_enrichment_celltype_v019=CL:0000473;2.16e-42;39!CL:0000234;2.16e-42;39!CL:0000576;2.58e-37;48!CL:0000860;1.05e-33;33!CL:0002057;1.05e-33;33!CL:0000766;2.72e-30;69!CL:0000235;5.91e-25;6!CL:0000763;2.14e-19;100!CL:0000875;7.70e-14;3!CL:0002396;7.70e-14;3!CL:0002619;1.39e-12;3!CL:0002087;1.41e-11;104!CL:0000738;6.38e-09;136!CL:0002393;4.91e-07;6!CL:0002397;4.91e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.87e-72,48;CL:0000234,2.87e-72,48;CL:0002194,1.01e-68,59;CL:0000576,1.01e-68,59;CL:0000040,1.01e-68,59;CL:0000559,1.01e-68,59;CL:0000766,2.73e-66,72;CL:0002009,2.98e-66,61;CL:0000839,9.95e-61,66;CL:0000557,1.01e-59,67;CL:0000860,3.42e-52,42;CL:0002057,3.42e-52,42;CL:0000763,2.90e-44,108;CL:0000049,2.90e-44,108;CL:0002087,3.16e-36,115;CL:0000738,1.38e-35,136;CL:0002031,3.28e-32,120;CL:0000037,5.77e-29,168;CL:0002032,9.17e-29,161;CL:0000837,9.17e-29,161;CL:0000988,4.60e-27,177;CL:0000235,6.31e-25,6;CL:0002393,6.46e-17,9;CL:0002397,6.46e-17,9;CL:0000875,9.55e-14,3;CL:0002396,9.55e-14,3;CL:0002619,1.75e-12,3;CL:0000134,2.84e-09,354;CL:0002320,6.27e-09,361;CL:0000219,1.01e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;7.10e-36;42!CL:0000049;8.57e-20;108 | |ontology_enrichment_development_v019=CL:0002057;7.10e-36;42!CL:0000049;8.57e-20;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.54e-58!102;UBERON:0003061!1.54e-58!102;UBERON:0002193!1.14e-53!112;UBERON:0002371!6.80e-44!80;UBERON:0001474!8.47e-40!86;UBERON:0002405!4.50e-38!115;UBERON:0004765!1.06e-31!101;UBERON:0001434!1.06e-31!101;UBERON:0003081!9.52e-21!216;UBERON:0002204!3.61e-15!167;UBERON:0000178!1.67e-11!15;UBERON:0000179!1.67e-11!15;UBERON:0000463!1.67e-11!15;UBERON:0007023!2.89e-10!115;UBERON:0000926!1.55e-08!448;UBERON:0004120!1.55e-08!448;UBERON:0006603!1.55e-08!448 | |ontology_enrichment_uberon=UBERON:0002390!1.54e-58!102;UBERON:0003061!1.54e-58!102;UBERON:0002193!1.14e-53!112;UBERON:0002371!6.80e-44!80;UBERON:0001474!8.47e-40!86;UBERON:0002405!4.50e-38!115;UBERON:0004765!1.06e-31!101;UBERON:0001434!1.06e-31!101;UBERON:0003081!9.52e-21!216;UBERON:0002204!3.61e-15!167;UBERON:0000178!1.67e-11!15;UBERON:0000179!1.67e-11!15;UBERON:0000463!1.67e-11!15;UBERON:0007023!2.89e-10!115;UBERON:0000926!1.55e-08!448;UBERON:0004120!1.55e-08!448;UBERON:0006603!1.55e-08!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.66e-16;15!UBERON:0000179;1.66e-16;15!UBERON:0000463;1.66e-16;15!UBERON:0002390;1.61e-10;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.66e-16;15!UBERON:0000179;1.66e-16;15!UBERON:0000463;1.66e-16;15!UBERON:0002390;1.61e-10;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.13e-69,98;UBERON:0003061,1.13e-69,98;UBERON:0002193,1.84e-62,108;UBERON:0002371,7.85e-52,76;UBERON:0001474,1.60e-47,82;UBERON:0002405,8.07e-47,93;UBERON:0004765,1.17e-42,90;UBERON:0001434,1.15e-37,100;UBERON:0003081,7.57e-31,203;UBERON:0002204,1.49e-19,167;UBERON:0000926,1.21e-16,315;UBERON:0004120,1.21e-16,315;UBERON:0006603,1.21e-16,315;UBERON:0000178,1.45e-16,15;UBERON:0000179,1.45e-16,15;UBERON:0000463,1.45e-16,15;UBERON:0002384,1.84e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,1.15148819429164,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0,2.01523926815932,1.6194683300949,1.03030227053675,9.01469080433301,2.64513160582167,5.09426528494414,0.929716147622738,0.822335776043652,0.619412741790207,0.575384784644301,0.256160706529101,1.6553756092201,4.13694816883942,0,2.70852973188684,3.9530891303947,1.36453075028923,2.9214052977861,2.75475503133812,1.28371610830437,0.639337125799041,2.30895910130701,1.19678194572979,0.852449501065388,0.290209238628584,0,1.24564449799115,0.75374599577023,0.521482918420201,0.65156653411535,1.21079900526674,0,0.632924774881769,6.33765858935825,3.61427309940574,2.93522103711726,7.30136102452218,6.90813707070929,6.91120022797445,4.27519115611873,3.18266683518544,4.01861138282195,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.451725357233318,0.383959833463255,0,1.18388626022008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44703808522356,3.27605971194933,3.86441021950693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86495122564762,1.50677127429638,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,2.53723804616085,5.35246044999663,3.98753031021914,1.42939065274673,1.23408681925858,5.18778648954174,2.16012574895246,0,0,0,0,0,0,0,0,0,0,0,1.29848776109822,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0.390776190804081,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.53746777989381,0,0,0.0787831823072236,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.315222829196793,0.104909176269996,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,0.427149650270779,0.471612915298998,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,3.94732455515385,1.54698931136585,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,0.129177819672012,0.434523000071005,0,0.12729431655633,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,1.15148819429164,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0,2.01523926815932,1.6194683300949,1.03030227053675,9.01469080433301,2.64513160582167,5.09426528494414,0.929716147622738,0.822335776043652,0.619412741790207,0.575384784644301,0.256160706529101,1.6553756092201,4.13694816883942,0,2.70852973188684,3.9530891303947,1.36453075028923,2.9214052977861,2.75475503133812,1.28371610830437,0.639337125799041,2.30895910130701,1.19678194572979,0.852449501065388,0.290209238628584,0,1.24564449799115,0.75374599577023,0.521482918420201,0.65156653411535,1.21079900526674,0,0.632924774881769,6.33765858935825,3.61427309940574,2.93522103711726,7.30136102452218,6.90813707070929,6.91120022797445,4.27519115611873,3.18266683518544,4.01861138282195,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.451725357233318,0.383959833463255,0,1.18388626022008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44703808522356,3.27605971194933,3.86441021950693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86495122564762,1.50677127429638,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,2.53723804616085,5.35246044999663,3.98753031021914,1.42939065274673,1.23408681925858,5.18778648954174,2.16012574895246,0,0,0,0,0,0,0,0,0,0,0,1.29848776109822,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0.390776190804081,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.53746777989381,0,0,0.0787831823072236,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.315222829196793,0.104909176269996,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,0.427149650270779,0.471612915298998,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,3.94732455515385,1.54698931136585,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,0.129177819672012,0.434523000071005,0,0.12729431655633,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p2@NLRC4 | |short_description=p2@NLRC4 | ||
}} | }} |
Latest revision as of 23:14, 16 September 2015
Short description: | p2@NLRC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NLRC4_5end |
Coexpression cluster: | C3875_CD14_Whole_CD14CD16_small_Neutrophils_Macrophage_esophagus |
Association with transcript: | 33bp_to_ENST00000404025_5end |
EntrezGene: | NLRC4 |
HGNC: | 16412 |
UniProt: | Q9NPP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.13e-69 | 98 |
blood island | 1.13e-69 | 98 |
hemolymphoid system | 1.84e-62 | 108 |
bone marrow | 7.85e-52 | 76 |
bone element | 1.60e-47 | 82 |
immune system | 8.07e-47 | 93 |
skeletal element | 1.17e-42 | 90 |
skeletal system | 1.15e-37 | 100 |
lateral plate mesoderm | 7.57e-31 | 203 |
musculoskeletal system | 1.49e-19 | 167 |
mesoderm | 1.21e-16 | 315 |
mesoderm-derived structure | 1.21e-16 | 315 |
presumptive mesoderm | 1.21e-16 | 315 |
blood | 1.45e-16 | 15 |
haemolymphatic fluid | 1.45e-16 | 15 |
organism substance | 1.45e-16 | 15 |
connective tissue | 1.84e-08 | 371 |