FFCP PHASE1:Hg19::chr13:28195482..28195491,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:28195482..28195491,-
|short_description=p4@LNX2
|description=CAGE_peak_4_at_LNX2_5end
|association_with_transcript=-238bp_to_uc001urm.1_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=222484 | |EntrezGene=222484 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=20421 | |HGNC=20421 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-238bp_to_uc001urm.1_5end | |||
|cluster_id=chr13:28195482..28195491,- | |||
|coexpression_cluster_id=C123 | |||
|description=CAGE_peak_4_at_LNX2_5end | |||
|id=chr13:28195482..28195491,- | |||
|ontology_enrichment_celltype=CL:0000838!8.10e-14!52;CL:0000542!2.39e-13!53;CL:0000051!2.39e-13!53;CL:0000738!1.29e-10!140;CL:0000791!2.27e-10!18;CL:0000789!2.27e-10!18;CL:0002420!2.27e-10!18;CL:0002419!2.27e-10!18;CL:0000790!2.27e-10!18;CL:0000624!2.86e-08!6;CL:0000037!8.75e-08!172;CL:0000566!8.75e-08!172;CL:0002031!9.02e-08!124;CL:0002087!4.74e-07!119;CL:0002032!9.33e-07!165;CL:0000837!9.33e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000624;1.44e-25;6!CL:0000791;4.31e-18;18!CL:0000789;4.31e-18;18!CL:0002419;4.31e-18;18!CL:0000623;2.85e-14;3!CL:0000542;6.85e-14;53!CL:0000898;2.62e-13;3!CL:0000084;1.51e-12;25!CL:0000236;3.97e-11;13!CL:0000815;2.47e-09;2!CL:0000792;2.47e-09;2!CL:0002677;2.47e-09;2!CL:0000094;2.32e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.87e-25,6;CL:0000838,1.26e-22,52;CL:0000542,4.08e-22,53;CL:0000051,4.08e-22,53;CL:0000791,5.15e-18,18;CL:0000789,5.15e-18,18;CL:0002420,5.15e-18,18;CL:0002419,5.15e-18,18;CL:0000790,5.15e-18,18;CL:0000738,1.65e-17,136;CL:0000623,2.62e-14,3;CL:0000825,2.62e-14,3;CL:0002087,9.36e-14,115;CL:0000898,3.38e-13,3;CL:0000037,6.14e-13,168;CL:0000084,1.71e-12,25;CL:0000827,1.71e-12,25;CL:0000988,5.92e-12,177;CL:0002031,8.40e-12,120;CL:0002032,1.69e-11,161;CL:0000837,1.69e-11,161;CL:0000236,2.50e-10,14;CL:0000815,2.99e-09,2;CL:0000792,2.99e-09,2;CL:0002677,2.99e-09,2;CL:0000094,2.10e-08,8 | |||
|ontology_enrichment_development_v019=CL:0000790;4.31e-18;18!CL:0000051;6.85e-14;53 | |||
|ontology_enrichment_disease=DOID:305!2.23e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p4@LNX2 | |||
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Latest revision as of 23:20, 16 September 2015
Short description: | p4@LNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LNX2_5end |
Coexpression cluster: | C123_CD19_Natural_CD8_CD4_CD14_Peripheral_Basophils |
Association with transcript: | -238bp_to_uc001urm.1_5end |
EntrezGene: | LNX2 |
HGNC: | 20421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.87e-25 | 6 |
lymphoid lineage restricted progenitor cell | 1.26e-22 | 52 |
lymphocyte | 4.08e-22 | 53 |
common lymphoid progenitor | 4.08e-22 | 53 |
mature alpha-beta T cell | 5.15e-18 | 18 |
alpha-beta T cell | 5.15e-18 | 18 |
immature T cell | 5.15e-18 | 18 |
mature T cell | 5.15e-18 | 18 |
immature alpha-beta T cell | 5.15e-18 | 18 |
leukocyte | 1.65e-17 | 136 |
natural killer cell | 2.62e-14 | 3 |
pro-NK cell | 2.62e-14 | 3 |
nongranular leukocyte | 9.36e-14 | 115 |
naive T cell | 3.38e-13 | 3 |
hematopoietic stem cell | 6.14e-13 | 168 |
T cell | 1.71e-12 | 25 |
pro-T cell | 1.71e-12 | 25 |
hematopoietic cell | 5.92e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 8.40e-12 | 120 |
hematopoietic oligopotent progenitor cell | 1.69e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.69e-11 | 161 |
B cell | 2.50e-10 | 14 |
regulatory T cell | 2.99e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.99e-09 | 2 |
naive regulatory T cell | 2.99e-09 | 2 |
granulocyte | 2.10e-08 | 8 |