FFCP PHASE1:Hg19::chr1:151483855..151483871,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:151483855..151483871,+ to FFCP PHASE1:Hg19::chr1:151483855..151483871,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57530 | |EntrezGene=57530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17429 | |HGNC=17429 | ||
|TSSclassifier=strong | |||
|UniProt=A6PVU7,Q9P2M7 | |UniProt=A6PVU7,Q9P2M7 | ||
|association_with_transcript=0bp_to_ENST00000427934,NM_020770,uc009wmw.2_5end | |||
|cluster_id=chr1:151483855..151483871,+ | |||
|coexpression_cluster_id=C3864 | |||
|description=CAGE_peak_2_at_CGN_5end | |||
|id=chr1:151483855..151483871,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.40e-12!254;CL:0000223!6.74e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.39e-10;7!CL:0000586;2.39e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.57e-10,7;CL:0000586,2.57e-10,7;CL:0000066,2.22e-08,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.71e-21!106;DOID:0050687!3.45e-18!143;DOID:299!1.93e-09!25;DOID:14566!3.03e-09!239;DOID:162!4.20e-09!235 | |||
|ontology_enrichment_disease_v019=DOID:299;3.60e-14;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,3.05e-14,25;DOID:305,7.01e-13,106;DOID:0050687,2.04e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.07e-15!129;UBERON:0004185!1.07e-15!129;UBERON:0001007!1.77e-14!155;UBERON:0001555!1.77e-14!155;UBERON:0007026!1.77e-14!155;UBERON:0004119!2.39e-14!169;UBERON:0000925!2.39e-14!169;UBERON:0006595!2.39e-14!169;UBERON:0007023!8.26e-14!115;UBERON:0000466!2.20e-13!126;UBERON:0005911!8.10e-13!82;UBERON:0005177!1.37e-12!107;UBERON:0000077!1.73e-12!130;UBERON:0000062!1.53e-10!511;UBERON:0001041!4.94e-10!98;UBERON:0000464!5.39e-10!104;UBERON:0009569!4.76e-09!113;UBERON:0005172!1.06e-08!55;UBERON:0005173!1.06e-08!55;UBERON:0000064!1.09e-08!219;UBERON:0000481!3.28e-08!347;UBERON:0005409!4.14e-08!35;UBERON:0001049!5.39e-07!57;UBERON:0005068!5.39e-07!57;UBERON:0006241!5.39e-07!57;UBERON:0007135!5.39e-07!57;UBERON:0003929!5.42e-07!54;UBERON:0002417!9.56e-07!61;UBERON:0000916!9.56e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.31e-14;22!UBERON:0000160;1.50e-14;17!UBERON:0004921;1.34e-11;33!UBERON:0000059;2.33e-08;11!UBERON:0002423;1.08e-07;25!UBERON:0002108;2.00e-07;4!UBERON:0002294;3.04e-07;7!UBERON:0001173;3.04e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.81e-15,17;UBERON:0005409,1.42e-12,25;UBERON:0004921,1.98e-11,118;UBERON:0001007,1.27e-09,145;UBERON:0001555,1.27e-09,145;UBERON:0007026,1.27e-09,145;UBERON:0009856,9.91e-09,26;UBERON:0000059,1.38e-08,11;UBERON:0004119,1.96e-08,160;UBERON:0000925,1.96e-08,160;UBERON:0006595,1.96e-08,160;UBERON:0005172,3.40e-08,54;UBERON:0005173,3.40e-08,54;UBERON:0009497,9.89e-08,25;UBERON:0000015,9.89e-08,25;UBERON:0002423,9.89e-08,25;UBERON:0006235,9.89e-08,25;UBERON:0004161,9.89e-08,25;UBERON:0007499,1.03e-07,25;UBERON:0002108,1.99e-07,4;UBERON:0011216,5.02e-07,223;UBERON:0009854,5.23e-07,23;UBERON:0002417,6.62e-07,60;UBERON:0000916,6.62e-07,60;UBERON:0005177,9.13e-07,101;UBERON:0004907,9.39e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,3.93174298402414,6.28021051175185,0.218441372130172,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0,0,0,1.41802225746102,0.221729397462564,0.43917392846563,1.89919659471683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0,0,1.58565817968474,0.662648841607426,0.929551542956147,1.34759371519982,1.00928340350251,0.72995471815166,0,0,0,0,0,0,0.337169380156203,0,0,0,0,0,0.196221465125346,0,0,0,0.8231480226628,0,2.53510069643662,6.87979051674338,4.13552934676983,0.441463099414651,10.2080403990784,0.343135620597051,0.109750285408626,1.1240175325762,0.201057944823262,0.185176890317059,0,0,0,6.02838105870399,0,0,0,0,3.1608175918371,5.15091697256924,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0.207328115540772,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.37242642508896,0.200506470303285,1.19705285616665,0,0,0,4.06079651616671,1.30926073077505,0.784349769176855,2.92278449306521,1.47772280450026,0,0,0,0,0,0.501689773854853,0.764628819135115,1.66215201785745,0.447749509444357,0,0,0.256450125116389,0,0.325378394664303,3.19427136107939,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7887322147588,0,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.747768497892312,0,1.22520107990516,0,0.28853842595289,0.640276590135727,0.478278818186467,0,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,1.57768678274367,0.445773537109913,0.284136146806413,1.67121139316383,2.67268212749375,2.45728561679386,0,0.281338832821026,0.445234820091624,0.329607748453519,0.422250816255987,0.597743964753209,1.93398740871803,1.0077309914171,0.102268682502155,0.123084805461069,0,2.96565558786179,4.11748701753901,0,0.197286811273867,0,0,0.969332746095218,0.185536196323703,0,1.04171104434093,0.262379999988587,0.724999575434793,0.455173793141999,2.2882828526349,0.709163045303809,0.344743373241465,0.583209226766509,0,0,0.241192877250816,0,1.99042667876204,0.591095237907095,0.219385397153973,0,0.41827123283581,0.230850775511391,0,10.3753756974627,3.8595787096202,14.3414530937051,0.638002319463839,0.915975934018623,0,1.02193298195737,0,0,0,0,0,0,0,0,1.46909527343233,5.51276978592369,0.216388639742091,10.9478812418636,5.66128412821371,9.77648231893801,0,0,0.208843899010911,1.01101699471016,0.802577647298789,1.1713222286267,0,0.586993856796269,0,1.18375320854817,10.8891644443797,0,0,0.300646838828985,0.207376382794494,0,0.330991955875499,0,0,1.70765727617876,0.416024019039416,3.47119476670262,0.391969589657511,1.21882889212564,0.698906672968121,0.343972064943233,0,0,0,0.969890164884194,0,0.677942222341597,0,0,0.443175571691151,3.32437350649165,0.961905843018405,3.41524791582964,0.39961921916426,4.46680293177729,1.03082936549324,0.857974989309823,0,0,0.942776138467182,0.135904206073614,0,0,0,1.20084057741958,1.23214841002794,0,0,0,0,0,0,2.59582700648688,0,0,0.0671834724867263,0,5.82479747637269,0.236349546921671,0.329663433524666,0.26961417541674,0.688992370603241,0.0846733320657845,0,0.408610218334727,0.964518890790115,1.78801267576404,2.07720169014593,0.2249738915515,0,0.182248669974074,0.335434687599266,2.04894838977915,3.46200281690987,0.211200673038813,0,0.191915197319445,0,0,0,0,0.864221491201268,0,0,0,0,0,2.93104467356165,10.6005511129777,0.646414781807753,1.05786081394152,0.855434189421647,0.704815022316672,3.52398461473392,0.78602152549833,3.31391244277756,0,0.790446527591777,0.121792598380896,0,0,0,0,0,2.19875734750328,0,0,0.250381861413,1.14681839138014,0.887432412294818,0.310482014706917,0,0.124980407962107,0.454947352624943,0,0,1.87333962322753,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,3.43106546199881,0,0,0.231522474323834,0,0,0,0,0,0.192914038270915,0.168942440653073,0,0,0,0.967809053062115,6.04066957402104,1.46151324344699,3.10774249086104,0.327609848846413,0,5.70542733068293,0.19998739585493,0.320075189082423,0.172214979660816,0,0,0.139879507719444,0.622077260032973,0.255788742607303,0,0.157265941855896,0.218419276384028,0.169732529954025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| ||
|short_description=p2@CGN | |||
}} | }} |
Latest revision as of 01:12, 17 September 2015
Short description: | p2@CGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CGN_5end |
Coexpression cluster: | C3864_small_Intestinal_serous_choriocarcinoma_Hepatocyte_rectal_Prostate |
Association with transcript: | 0bp_to_ENST00000427934, NM_020770, uc009wmw.2_5end |
EntrezGene: | CGN |
HGNC: | 17429 |
UniProt: | A6PVU7Q9P2M7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.57e-10 | 7 |
germ cell | 2.57e-10 | 7 |
epithelial cell | 2.22e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.81e-15 | 17 |
gastrointestinal system | 1.42e-12 | 25 |
subdivision of digestive tract | 1.98e-11 | 118 |
digestive system | 1.27e-09 | 145 |
digestive tract | 1.27e-09 | 145 |
primitive gut | 1.27e-09 | 145 |
sac | 9.91e-09 | 26 |
large intestine | 1.38e-08 | 11 |
endoderm-derived structure | 1.96e-08 | 160 |
endoderm | 1.96e-08 | 160 |
presumptive endoderm | 1.96e-08 | 160 |
abdomen element | 3.40e-08 | 54 |
abdominal segment element | 3.40e-08 | 54 |
epithelium of foregut-midgut junction | 9.89e-08 | 25 |
anatomical boundary | 9.89e-08 | 25 |
hepatobiliary system | 9.89e-08 | 25 |
foregut-midgut junction | 9.89e-08 | 25 |
septum transversum | 9.89e-08 | 25 |
epithelial sac | 1.03e-07 | 25 |
small intestine | 1.99e-07 | 4 |
organ system subdivision | 5.02e-07 | 223 |
digestive tract diverticulum | 5.23e-07 | 23 |
abdominal segment of trunk | 6.62e-07 | 60 |
abdomen | 6.62e-07 | 60 |
trunk region element | 9.13e-07 | 101 |
lower digestive tract | 9.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.05e-14 | 25 |
carcinoma | 7.01e-13 | 106 |
cell type cancer | 2.04e-09 | 143 |