FFCP PHASE1:Hg19::chr13:30951306..30951346,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42761 | |HGNC=42761 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-24bp_to_ENST00000420219_5end | |association_with_transcript=-24bp_to_ENST00000420219_5end | ||
|cluster_id=chr13:30951306..30951346,- | |||
|coexpression_cluster_id=C1118 | |||
|description=CAGE_peak_3_at_LINC00426_5end | |description=CAGE_peak_3_at_LINC00426_5end | ||
|id=chr13:30951306..30951346,- | |id=chr13:30951306..30951346,- | ||
|ontology_enrichment_celltype=CL:0000542!9.42e-68!53;CL:0000051!9.42e-68!53;CL:0000838!1.83e-65!52;CL:0000945!1.43e-54!24;CL:0000826!1.43e-54!24;CL:0000236!8.15e-33!14;CL:0002087!5.33e-27!119;CL:0000738!3.20e-22!140;CL:0002031!2.56e-21!124;CL:0000037!1.18e-19!172;CL:0000566!1.18e-19!172;CL:0002032!6.42e-18!165;CL:0000837!6.42e-18!165;CL:0000988!7.66e-18!182;CL:0000084!8.82e-16!25;CL:0000827!8.82e-16!25;CL:0000791!9.68e-10!18;CL:0000789!9.68e-10!18;CL:0002420!9.68e-10!18;CL:0002419!9.68e-10!18;CL:0000790!9.68e-10!18;CL:0000624!7.78e-09!6;CL:0000817!2.51e-08!3;CL:0000898!2.91e-07!3 | |ontology_enrichment_celltype=CL:0000542!9.42e-68!53;CL:0000051!9.42e-68!53;CL:0000838!1.83e-65!52;CL:0000945!1.43e-54!24;CL:0000826!1.43e-54!24;CL:0000236!8.15e-33!14;CL:0002087!5.33e-27!119;CL:0000738!3.20e-22!140;CL:0002031!2.56e-21!124;CL:0000037!1.18e-19!172;CL:0000566!1.18e-19!172;CL:0002032!6.42e-18!165;CL:0000837!6.42e-18!165;CL:0000988!7.66e-18!182;CL:0000084!8.82e-16!25;CL:0000827!8.82e-16!25;CL:0000791!9.68e-10!18;CL:0000789!9.68e-10!18;CL:0002420!9.68e-10!18;CL:0002419!9.68e-10!18;CL:0000790!9.68e-10!18;CL:0000624!7.78e-09!6;CL:0000817!2.51e-08!3;CL:0000898!2.91e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.06e-100;24!CL:0000236;7.18e-66;13!CL:0000542;4.16e-39;53!CL:0002087;9.54e-09;104!CL:0000785;6.76e-07;1!CL:0000819;6.76e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,4.73e-101,24;CL:0000826,4.73e-101,24;CL:0000236,5.71e-71,14;CL:0000542,2.91e-61,53;CL:0000051,2.91e-61,53;CL:0000838,1.97e-57,52;CL:0002087,6.80e-25,115;CL:0002031,1.58e-21,120;CL:0000738,3.35e-20,136;CL:0000817,1.69e-16,3;CL:0002032,3.33e-16,161;CL:0000837,3.33e-16,161;CL:0000037,2.68e-15,168;CL:0000988,3.09e-14,177;CL:0000785,7.93e-12,2;CL:0000955,7.93e-12,2;CL:0000818,7.93e-12,2;CL:0000954,7.93e-12,2;CL:0000816,7.93e-12,2;CL:0000819,6.59e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;4.16e-39;53!CL:0000954;7.51e-12;2 | |||
|ontology_enrichment_disease=DOID:0060058!1.23e-08!10;DOID:2531!8.77e-08!51;DOID:0060083!8.77e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.86e-13;10!DOID:0060073;6.76e-07;1!DOID:8675;6.76e-07;1!DOID:12603;6.76e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.04e-13,10;DOID:2531,1.67e-08,51;DOID:0060083,1.67e-08,51;DOID:0060073,6.59e-07,1;DOID:8675,6.59e-07,1;DOID:12603,6.96e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!2.38e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.85e-11;2!UBERON:0005058;1.85e-11;2!UBERON:0009113;1.85e-11;2!UBERON:0004177;7.61e-10;5!UBERON:0005057;7.61e-10;5!UBERON:0002372;8.20e-07;1!UBERON:0001961;8.20e-07;1!UBERON:0001744;8.20e-07;1!UBERON:0001042;8.20e-07;1!UBERON:0001735;8.20e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,3.07e-07,7;UBERON:0005057,3.07e-07,7;UBERON:0002372,8.21e-07,1;UBERON:0001961,8.21e-07,1;UBERON:0001744,8.21e-07,1;UBERON:0001735,8.21e-07,1 | |||
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| ||
|short_description=p3@LINC00426 | |short_description=p3@LINC00426 | ||
}} | }} |
Latest revision as of 01:58, 17 September 2015
Short description: | p3@LINC00426 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LINC00426_5end |
Coexpression cluster: | C1118_Burkitt_lymphoma_diffuse_b_acute_CD19_plasma |
Association with transcript: | -24bp_to_ENST00000420219_5end |
EntrezGene: | NA |
HGNC: | 42761 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 4.73e-101 | 24 |
pro-B cell | 4.73e-101 | 24 |
B cell | 5.71e-71 | 14 |
lymphocyte | 2.91e-61 | 53 |
common lymphoid progenitor | 2.91e-61 | 53 |
lymphoid lineage restricted progenitor cell | 1.97e-57 | 52 |
nongranular leukocyte | 6.80e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 1.58e-21 | 120 |
leukocyte | 3.35e-20 | 136 |
precursor B cell | 1.69e-16 | 3 |
hematopoietic oligopotent progenitor cell | 3.33e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.33e-16 | 161 |
hematopoietic stem cell | 2.68e-15 | 168 |
hematopoietic cell | 3.09e-14 | 177 |
mature B cell | 7.93e-12 | 2 |
pre-B-II cell | 7.93e-12 | 2 |
transitional stage B cell | 7.93e-12 | 2 |
small pre-B-II cell | 7.93e-12 | 2 |
immature B cell | 7.93e-12 | 2 |
B-1 B cell | 6.59e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 3.07e-07 | 7 |
immune organ | 3.07e-07 | 7 |
tonsil | 8.21e-07 | 1 |
mucosa-associated lymphoid tissue | 8.21e-07 | 1 |
lymphoid tissue | 8.21e-07 | 1 |
tonsillar ring | 8.21e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.04e-13 | 10 |
hematologic cancer | 1.67e-08 | 51 |
immune system cancer | 1.67e-08 | 51 |
lymphatic system cancer | 6.59e-07 | 1 |
lymphosarcoma | 6.59e-07 | 1 |
acute leukemia | 6.96e-07 | 1 |