FFCP PHASE1:Hg19::chr13:31191642..31191749,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3146 | |EntrezGene=3146 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4983 | |HGNC=4983 | ||
|TSSclassifier=strong | |||
|UniProt=P09429 | |UniProt=P09429 | ||
|association_with_transcript=0bp_to_ENST00000405805_5end | |association_with_transcript=0bp_to_ENST00000405805_5end | ||
|cluster_id=chr13:31191642..31191749,- | |||
|coexpression_cluster_id=C646 | |||
|description=CAGE_peak_2_at_HMGB1_5end | |description=CAGE_peak_2_at_HMGB1_5end | ||
|id=chr13:31191642..31191749,- | |id=chr13:31191642..31191749,- | ||
|ontology_enrichment_celltype=CL:0000738!5.59e-25!140;CL:0002057!3.93e-21!42;CL:0002031!2.77e-20!124;CL:0002087!2.16e-19!119;CL:0000860!4.20e-19!45;CL:0000766!9.71e-18!76;CL:0000988!1.92e-17!182;CL:0000037!2.34e-17!172;CL:0000566!2.34e-17!172;CL:0002032!1.90e-15!165;CL:0000837!1.90e-15!165;CL:0000557!2.97e-14!71;CL:0000839!3.02e-14!70;CL:0002009!1.41e-13!65;CL:0002194!3.58e-13!63;CL:0000576!3.58e-13!63;CL:0000040!3.58e-13!63;CL:0000559!3.58e-13!63;CL:0000763!1.45e-09!112;CL:0000049!1.45e-09!112 | |ontology_enrichment_celltype=CL:0000738!5.59e-25!140;CL:0002057!3.93e-21!42;CL:0002031!2.77e-20!124;CL:0002087!2.16e-19!119;CL:0000860!4.20e-19!45;CL:0000766!9.71e-18!76;CL:0000988!1.92e-17!182;CL:0000037!2.34e-17!172;CL:0000566!2.34e-17!172;CL:0002032!1.90e-15!165;CL:0000837!1.90e-15!165;CL:0000557!2.97e-14!71;CL:0000839!3.02e-14!70;CL:0002009!1.41e-13!65;CL:0002194!3.58e-13!63;CL:0000576!3.58e-13!63;CL:0000040!3.58e-13!63;CL:0000559!3.58e-13!63;CL:0000763!1.45e-09!112;CL:0000049!1.45e-09!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.00e-17;33!CL:0002057;7.00e-17;33!CL:0000576;2.96e-12;48!CL:0000473;1.02e-11;39!CL:0000234;1.02e-11;39!CL:0000766;5.99e-10;69!CL:0002087;1.37e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.65e-27,136;CL:0002031,5.29e-22,120;CL:0000860,2.48e-21,42;CL:0002057,2.48e-21,42;CL:0002087,4.26e-21,115;CL:0000766,9.60e-20,72;CL:0000037,1.04e-18,168;CL:0000988,1.09e-18,177;CL:0000473,2.56e-18,48;CL:0000234,2.56e-18,48;CL:0002032,1.01e-16,161;CL:0000837,1.01e-16,161;CL:0000839,4.99e-16,66;CL:0000557,5.12e-16,67;CL:0002009,2.20e-15,61;CL:0002194,5.63e-15,59;CL:0000576,5.63e-15,59;CL:0000040,5.63e-15,59;CL:0000559,5.63e-15,59;CL:0000763,1.35e-10,108;CL:0000049,1.35e-10,108 | |||
|ontology_enrichment_development_v019=CL:0002057;6.78e-16;42!UBERON:0006601;1.34e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.20e-30!115;UBERON:0001049!2.01e-27!57;UBERON:0005068!2.01e-27!57;UBERON:0006241!2.01e-27!57;UBERON:0007135!2.01e-27!57;UBERON:0002616!2.53e-21!59;UBERON:0003080!7.69e-21!42;UBERON:0002780!2.21e-20!41;UBERON:0001890!2.21e-20!41;UBERON:0006240!2.21e-20!41;UBERON:0001017!3.77e-19!82;UBERON:0000955!2.09e-18!69;UBERON:0006238!2.09e-18!69;UBERON:0002346!2.47e-17!90;UBERON:0005743!4.92e-17!86;UBERON:0002020!5.42e-17!34;UBERON:0003528!5.42e-17!34;UBERON:0001893!6.56e-17!34;UBERON:0003075!1.10e-16!86;UBERON:0007284!1.10e-16!86;UBERON:0002791!2.48e-16!33;UBERON:0000073!2.77e-16!94;UBERON:0001016!2.77e-16!94;UBERON:0001869!7.51e-16!32;UBERON:0002390!1.14e-14!102;UBERON:0003061!1.14e-14!102;UBERON:0002371!1.21e-12!80;UBERON:0002619!1.44e-12!22;UBERON:0002193!1.60e-12!112;UBERON:0001474!2.51e-12!86;UBERON:0003056!6.63e-12!61;UBERON:0000956!9.00e-12!25;UBERON:0000203!9.00e-12!25;UBERON:0001950!1.80e-11!20;UBERON:0004765!2.60e-08!101;UBERON:0001434!2.60e-08!101;UBERON:0000153!3.61e-08!129;UBERON:0007811!3.61e-08!129;UBERON:0003076!9.74e-08!15;UBERON:0003057!9.74e-08!15;UBERON:0002405!1.38e-07!115;UBERON:0000033!5.09e-07!123;UBERON:0002420!6.57e-07!9;UBERON:0007245!6.57e-07!9;UBERON:0010009!6.57e-07!9;UBERON:0010011!6.57e-07!9;UBERON:0000454!6.57e-07!9;UBERON:0002308!7.89e-07!9;UBERON:0000125!7.89e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.49e-15;41!UBERON:0001890;2.49e-15;41!UBERON:0000073;2.66e-15;53!UBERON:0002616;2.66e-15;53!UBERON:0001893;3.56e-15;34!UBERON:0003528;4.14e-15;34!UBERON:0002020;4.14e-15;34!UBERON:0002791;5.21e-15;32!UBERON:0001869;5.77e-15;32!UBERON:0002619;6.42e-13;22!UBERON:0000956;2.46e-12;25!UBERON:0000203;2.46e-12;25!UBERON:0001950;8.93e-12;20!UBERON:0007023;7.14e-09;114!UBERON:0000955;8.39e-09;68!UBERON:0001017;9.96e-09;75!UBERON:0001016;1.08e-07;83!UBERON:0002420;4.35e-07;9!UBERON:0007245;4.35e-07;9!UBERON:0010009;4.35e-07;9!UBERON:0010011;4.35e-07;9!UBERON:0000454;4.35e-07;9!UBERON:0000125;5.16e-07;9!UBERON:0002308;5.16e-07;9!UBERON:0004732;9.39e-07;13 | |||
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| ||
|short_description=p2@HMGB1 | |short_description=p2@HMGB1 | ||
}} | }} |
Latest revision as of 02:20, 17 September 2015
Short description: | p2@HMGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMGB1_5end |
Coexpression cluster: | C646_CD14_Mast_vagina_thymus_MCF7_immature_Eosinophils |
Association with transcript: | 0bp_to_ENST00000405805_5end |
EntrezGene: | HMGB1 |
HGNC: | 4983 |
UniProt: | P09429 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.65e-27 | 136 |
hematopoietic lineage restricted progenitor cell | 5.29e-22 | 120 |
classical monocyte | 2.48e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-21 | 42 |
nongranular leukocyte | 4.26e-21 | 115 |
myeloid leukocyte | 9.60e-20 | 72 |
hematopoietic stem cell | 1.04e-18 | 168 |
hematopoietic cell | 1.09e-18 | 177 |
defensive cell | 2.56e-18 | 48 |
phagocyte | 2.56e-18 | 48 |
hematopoietic oligopotent progenitor cell | 1.01e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.01e-16 | 161 |
myeloid lineage restricted progenitor cell | 4.99e-16 | 66 |
granulocyte monocyte progenitor cell | 5.12e-16 | 67 |
macrophage dendritic cell progenitor | 2.20e-15 | 61 |
monopoietic cell | 5.63e-15 | 59 |
monocyte | 5.63e-15 | 59 |
monoblast | 5.63e-15 | 59 |
promonocyte | 5.63e-15 | 59 |
myeloid cell | 1.35e-10 | 108 |
common myeloid progenitor | 1.35e-10 | 108 |