FFCP PHASE1:Hg19::chr9:33001567..33001644,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=54840 | |EntrezGene=54840 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=15984 | |HGNC=15984 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q5T782,F8W6G5,Q6JV85,Q7Z2E3,E7EUY4,C9JZ40,C9J8U3,E7EVB7,F8WBD6 | |UniProt=Q5T782,F8W6G5,Q6JV85,Q7Z2E3,E7EUY4,C9JZ40,C9J8U3,E7EVB7,F8WBD6 | ||
|association_with_transcript=0bp_to_ENST00000309615,ENST00000344355,ENST00000379812,ENST00000379813,ENST00000379819,ENST00000379825,ENST00000397172,ENST00000464632,ENST00000473221,ENST00000476858,ENST00000477119,ENST00000478279,ENST00000480031,ENST00000494973,NM_001195248,NM_001195249,NM_001195250,NM_001195251,NM_001195252,NM_001195254,NM_175069,NM_175073,NR_036576,NR_036577,NR_036578,NR_036579,uc003zrs.2,uc003zrt.2,uc003zru.2,uc003zrv.2,uc003zrw.2,uc003zrx.2,uc003zry.2,uc003zsb.1,uc003zsc.1_5end | |association_with_transcript=0bp_to_ENST00000309615,ENST00000344355,ENST00000379812,ENST00000379813,ENST00000379819,ENST00000379825,ENST00000397172,ENST00000464632,ENST00000473221,ENST00000476858,ENST00000477119,ENST00000478279,ENST00000480031,ENST00000494973,NM_001195248,NM_001195249,NM_001195250,NM_001195251,NM_001195252,NM_001195254,NM_175069,NM_175073,NR_036576,NR_036577,NR_036578,NR_036579,uc003zrs.2,uc003zrt.2,uc003zru.2,uc003zrv.2,uc003zrw.2,uc003zrx.2,uc003zry.2,uc003zsb.1,uc003zsc.1_5end | ||
|cluster_id=chr9:33001567..33001644,- | |||
|description=CAGE_peak_1_at_APTX_5end | |description=CAGE_peak_1_at_APTX_5end | ||
|id=chr9:33001567..33001644,- | |id=chr9:33001567..33001644,- | ||
Latest revision as of 02:53, 17 September 2015
| Short description: | p1@APTX |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_APTX_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000309615, ENST00000344355, ENST00000379812, ENST00000379813, ENST00000379819, ENST00000379825, ENST00000397172, ENST00000464632, ENST00000473221, ENST00000476858, ENST00000477119, ENST00000478279, ENST00000480031, ENST00000494973, NM_001195248, NM_001195249, NM_001195250, NM_001195251, NM_001195252, NM_001195254, NM_175069, NM_175073, NR_036576, NR_036577, NR_036578, NR_036579, uc003zrs.2, uc003zrt.2, uc003zru.2, uc003zrv.2, uc003zrw.2, uc003zrx.2, uc003zry.2, uc003zsb.1, uc003zsc.1_5end |
| EntrezGene: | APTX |
| HGNC: | 15984 |
| UniProt: | Q5T782F8W6G5Q6JV85Q7Z2E3E7EUY4C9JZ40C9J8U3E7EVB7F8WBD6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 2.58e-11 | 81 |
| nervous system | 4.04e-11 | 89 |
| neural tube | 1.12e-10 | 56 |
| neural rod | 1.12e-10 | 56 |
| future spinal cord | 1.12e-10 | 56 |
| neural keel | 1.12e-10 | 56 |
| regional part of forebrain | 7.04e-10 | 41 |
| forebrain | 7.04e-10 | 41 |
| anterior neural tube | 7.04e-10 | 41 |
| future forebrain | 7.04e-10 | 41 |
| regional part of nervous system | 1.11e-09 | 53 |
| regional part of brain | 1.11e-09 | 53 |
| brain grey matter | 2.23e-09 | 34 |
| gray matter | 2.23e-09 | 34 |
| telencephalon | 3.21e-09 | 34 |
| regional part of telencephalon | 1.04e-08 | 32 |
| cerebral hemisphere | 1.19e-08 | 32 |
| brain | 1.79e-08 | 68 |
| future brain | 1.79e-08 | 68 |
| larynx | 3.43e-07 | 9 |
| ecto-epithelium | 6.49e-07 | 104 |
| neocortex | 9.72e-07 | 20 |
