FFCP PHASE1:Hg19::chr9:33001567..33001644,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54840 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15984 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T782,F8W6G5,Q6JV85,Q7Z2E3,E7EUY4,C9JZ40,C9J8U3,E7EVB7,F8WBD6 | |||
|association_with_transcript=0bp_to_ENST00000309615,ENST00000344355,ENST00000379812,ENST00000379813,ENST00000379819,ENST00000379825,ENST00000397172,ENST00000464632,ENST00000473221,ENST00000476858,ENST00000477119,ENST00000478279,ENST00000480031,ENST00000494973,NM_001195248,NM_001195249,NM_001195250,NM_001195251,NM_001195252,NM_001195254,NM_175069,NM_175073,NR_036576,NR_036577,NR_036578,NR_036579,uc003zrs.2,uc003zrt.2,uc003zru.2,uc003zrv.2,uc003zrw.2,uc003zrx.2,uc003zry.2,uc003zsb.1,uc003zsc.1_5end | |||
|cluster_id=chr9:33001567..33001644,- | |||
|description=CAGE_peak_1_at_APTX_5end | |||
|id=chr9:33001567..33001644,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.45e-11!82;UBERON:0001049!5.25e-10!57;UBERON:0005068!5.25e-10!57;UBERON:0006241!5.25e-10!57;UBERON:0007135!5.25e-10!57;UBERON:0005743!6.14e-10!86;UBERON:0002780!7.04e-10!41;UBERON:0001890!7.04e-10!41;UBERON:0006240!7.04e-10!41;UBERON:0000073!7.59e-10!94;UBERON:0001016!7.59e-10!94;UBERON:0002020!2.23e-09!34;UBERON:0003528!2.23e-09!34;UBERON:0001893!3.21e-09!34;UBERON:0003080!4.01e-09!42;UBERON:0002791!4.03e-09!33;UBERON:0001869!1.19e-08!32;UBERON:0000955!5.75e-08!69;UBERON:0006238!5.75e-08!69;UBERON:0002616!1.38e-07!59;UBERON:0001737!3.43e-07!9;UBERON:0001950!9.72e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.16e-08;34!UBERON:0002020;2.16e-08;34!UBERON:0001893;2.44e-08;34!UBERON:0001869;5.05e-08;32!UBERON:0002791;5.14e-08;32!UBERON:0002780;2.49e-07;41!UBERON:0001890;2.49e-07;41!UBERON:0001737;3.06e-07;9!UBERON:0001557;3.06e-07;9!UBERON:0001950;8.00e-07;20!UBERON:0002619;9.32e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.58e-11,81;UBERON:0001016,4.04e-11,89;UBERON:0001049,1.12e-10,56;UBERON:0005068,1.12e-10,56;UBERON:0006241,1.12e-10,56;UBERON:0007135,1.12e-10,56;UBERON:0002780,7.04e-10,41;UBERON:0001890,7.04e-10,41;UBERON:0003080,7.04e-10,41;UBERON:0006240,7.04e-10,41;UBERON:0000073,1.11e-09,53;UBERON:0002616,1.11e-09,53;UBERON:0003528,2.23e-09,34;UBERON:0002020,2.23e-09,34;UBERON:0001893,3.21e-09,34;UBERON:0002791,1.04e-08,32;UBERON:0001869,1.19e-08,32;UBERON:0000955,1.79e-08,68;UBERON:0006238,1.79e-08,68;UBERON:0001737,3.43e-07,9;UBERON:0010371,6.49e-07,104;UBERON:0001950,9.72e-07,20 | |||
|phase1_expression=14.1709135831034,13.06013195735,12.9678051768293,15.0109947529696,17.8784437770915,29.6595098194125,25.3299878168311,13.8978372153903,14.3652095509911,11.7952289520724,9.07141518364156,12.2327168392896,8.17677632508206,10.7676727075241,10.6047160232933,16.1358035148426,12.6565850885035,11.684961446198,11.2224543721817,12.3121058076788,8.97603041474713,5.01527554364941,15.4567433050771,14.23494020758,13.0564345178595,19.6382452772235,19.9504432363368,19.5989845471061,14.9478425202584,14.5855171276941,9.75341576891279,34.0185853057203,15.3615018576908,15.5296684270051,14.2539649067755,24.4531079878365,11.450417134059,14.9578760303607,12.8348446380891,12.5866305015194,10.7479427635164,12.3079593087212,13.1363539493435,8.43309784921475,7.935394817465,7.5201058968223,8.36744532860465,7.81218987241469,12.3882548358041,11.507695692886,14.3449995656296,16.553756092201,11.721353145045,10.3277549373412,2.70852973188684,10.3533286748433,6.82265375144614,15.7306439111559,12.8555234795779,13.4790191371959,18.5407766481722,7.91643120448119,10.5715738539465,11.08184351385,11.6083695451434,10.2129340444405,11.2108004819203,12.8136819280939,9.38669253156363,16.5063521975889,12.7133895553007,10.3117738076518,12.0255707227536,14.7878700418359,15.9453224973783,16.9823502861784,16.0629942539488,15.3180430698336,17.5190889499817,13.9656244433212,13.9241674039363,14.2478039936414,14.0796995569058,7.09980194640771,9.7846017924991,14.0820973446947,14.0138595462604,8.04653415936277,9.91567309177293,10.494591299889,13.6611112586268,11.1575065980478,15.6732023531344,13.2171328579026,17.3757654524276,14.7495087474043,11.80258620683,17.6854843237124,11.308082444973,13.8764791174263,23.7923254642521,14.6768819777767,17.534405556712,17.2686208172019,18.5601721709147,18.6088471450242,14.8942125070759,13.1934059317445,12.3556380181884,12.8261565590867,19.8972012805811,15.6493666296928,17.3495278899611,22.7409703876256,19.8617495229456,14.616905207986,10.7301738208538,17.1813722741315,16.6992996732872,11.1497895013434,13.6727525309848,13.3063286222772,15.8103875031661,12.6706745042874,17.4903017173284,10.4181990899367,14.7803039445788,12.4996180799334,12.8371293976084,13.4686695611003,7.31420598941885,13.4140171940727,9.71755470010831,18.7948359239974,18.048164782892,10.5737958841401,17.4962908351242,8.75942766544745,13.5184788544617,15.2993284249169,10.7158438545614,17.2237484279492,4.00724817121796,6.67411997011973,12.9818957461873,14.1045087212406,9.1740992758017,11.9245312152671,13.7278778587231,17.4585025624896,15.9009925893364,4.30117297553062,11.8027770546582,11.3061588384802,7.1314904155684,12.6554299292431,15.8836174567976,11.6287541626198,8.53839030448104,14.0582657361161,12.0848795132744,12.9246257972147,9.51842024437861,17.2801647762558,11.3419872703446,14.4665559820209,8.08305741454211,13.1755432165487,9.19899824795299,12.3404535743857,7.14486801328588,13.1780417436063,7.75560528296651,4.79703457356788,13.9152146474689,14.9424003764204,13.902963985388,16.92336062418,15.6054088167277,12.3349072031308,14.9448594021587,11.1000396787722,12.7596524513904,11.8545391421326,18.4711950518208,11.3518070733699,10.37116664064,10.3101430006871,11.2377627658915,10.8389646093445,7.62188270814185,22.5474237396029,18.453515657967,19.1013097115058,10.2077085627447,15.9684612505298,10.8492070234554,5.94001428641027,8.90160945402805,11.8320977051943,11.4978902690598,14.9819141419119,14.138392745532,16.623846929051,13.608306247306,12.2595118319608,8.11285518095623,15.4267769097629,15.2481190335533,14.5219024396626,9.96079935449941,13.2040082277137,15.0456692688121,10.0479810617795,12.2837125178849,15.864975230679,21.1438301199801,13.3789900349381,12.0585367221412,13.2549766591426,14.9104028856978,19.9489154490728,16.6169380464278,17.9732593441866,14.1827982707234,16.6346665325622,18.0521085071801,19.0842866382939,18.0100611447753,15.7564803623363,12.868363394657,16.4239811584123,14.0804579096834,7.71889125831462,15.1948413487729,12.5379340568634,17.3251075600701,23.6613600079688,25.6248728918715,26.2702022572995,21.3970307100844,26.3634127351811,33.4551572946646,27.2359242483532,25.3125690011696,26.5475538293009,11.0723318193697,4.20725321410337,7.8199062152966,1.47008711385542,13.9430538304014,10.8110993834539,8.27105869353966,15.4512084795128,14.6356241866305,12.8675857723894,20.8525542276389,13.4882103909143,23.7248374891449,10.3699058577553,14.3355654336543,10.3993478527958,8.6598805215164,11.5930404975077,8.45342598497916,10.9718500298416,12.0376233269919,12.3665198952489,15.0138835612262,10.3018339451385,13.7881523408942,16.1462942946074,11.1473371716546,17.8094284574876,23.8534622042381,25.9448427953567,17.0161193135412,15.6942326797539,15.3353071666084,28.0818045600688,8.80484340132261,8.29312462163088,9.80015683235338,9.84690980725764,15.6839798901658,15.6615254478894,15.2382681373061,6.84289784090821,21.4909459749946,12.0137223137567,15.7204537946818,15.2498274709691,11.7709218584986,14.4476423067272,10.3417372606222,3.5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| |||
|short_description=p1@APTX | |||
}} |
Latest revision as of 02:53, 17 September 2015
Short description: | p1@APTX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_APTX_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000309615, ENST00000344355, ENST00000379812, ENST00000379813, ENST00000379819, ENST00000379825, ENST00000397172, ENST00000464632, ENST00000473221, ENST00000476858, ENST00000477119, ENST00000478279, ENST00000480031, ENST00000494973, NM_001195248, NM_001195249, NM_001195250, NM_001195251, NM_001195252, NM_001195254, NM_175069, NM_175073, NR_036576, NR_036577, NR_036578, NR_036579, uc003zrs.2, uc003zrt.2, uc003zru.2, uc003zrv.2, uc003zrw.2, uc003zrx.2, uc003zry.2, uc003zsb.1, uc003zsc.1_5end |
EntrezGene: | APTX |
HGNC: | 15984 |
UniProt: | Q5T782F8W6G5Q6JV85Q7Z2E3E7EUY4C9JZ40C9J8U3E7EVB7F8WBD6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.58e-11 | 81 |
nervous system | 4.04e-11 | 89 |
neural tube | 1.12e-10 | 56 |
neural rod | 1.12e-10 | 56 |
future spinal cord | 1.12e-10 | 56 |
neural keel | 1.12e-10 | 56 |
regional part of forebrain | 7.04e-10 | 41 |
forebrain | 7.04e-10 | 41 |
anterior neural tube | 7.04e-10 | 41 |
future forebrain | 7.04e-10 | 41 |
regional part of nervous system | 1.11e-09 | 53 |
regional part of brain | 1.11e-09 | 53 |
brain grey matter | 2.23e-09 | 34 |
gray matter | 2.23e-09 | 34 |
telencephalon | 3.21e-09 | 34 |
regional part of telencephalon | 1.04e-08 | 32 |
cerebral hemisphere | 1.19e-08 | 32 |
brain | 1.79e-08 | 68 |
future brain | 1.79e-08 | 68 |
larynx | 3.43e-07 | 9 |
ecto-epithelium | 6.49e-07 | 104 |
neocortex | 9.72e-07 | 20 |