FFCP PHASE1:Hg19::chr6:21594206..21594221,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6659 | |EntrezGene=6659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11200 | |HGNC=11200 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=135bp_to_ENST00000543472_5end | |association_with_transcript=135bp_to_ENST00000543472_5end | ||
|cluster_id=chr6:21594206..21594221,+ | |||
|coexpression_cluster_id=C214 | |coexpression_cluster_id=C214 | ||
|description=CAGE_peak_15_at_SOX4_5end | |description=CAGE_peak_15_at_SOX4_5end | ||
|id=chr6:21594206..21594221,+ | |id=chr6:21594206..21594221,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.22e-08!254;CL:0000047!7.57e-08!8;CL:0002319!1.05e-07!25 | |ontology_enrichment_celltype=CL:0000066!7.22e-08!254;CL:0000047!7.57e-08!8;CL:0002319!1.05e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000540;2.60e-16;6!CL:0000404;2.60e-16;6!CL:0002322;4.13e-11;5!CL:0002032;5.94e-07;1!CL:0000167;5.94e-07;1!CL:0000164;5.94e-07;1!CL:0000502;5.94e-07;1!CL:0000172;5.94e-07;1!CL:1001319;5.94e-07;1!CL:1000600;5.94e-07;1!CL:0000557;5.94e-07;1!CL:0000173;5.94e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,7.82e-19,8;CL:0000540,2.37e-16,6;CL:0000031,2.37e-16,6;CL:0000404,2.37e-16,6;CL:0002322,2.98e-11,5;CL:0000167,3.20e-07,1;CL:0000164,3.20e-07,1;CL:0000502,3.20e-07,1;CL:0000172,3.20e-07,1;CL:0000173,3.20e-07,1;CL:0002351,3.20e-07,1;CL:1001319,7.73e-07,1;CL:1000600,7.73e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000031;2.60e-16;6!CL:0002351;5.94e-07;1 | |||
|ontology_enrichment_disease=DOID:305!1.33e-07!106;DOID:162!1.52e-07!235;DOID:14566!1.55e-07!239;DOID:0050687!5.07e-07!143 | |ontology_enrichment_disease=DOID:305!1.33e-07!106;DOID:162!1.52e-07!235;DOID:14566!1.55e-07!239;DOID:0050687!5.07e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:4430;5.94e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,3.20e-07,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.09e-08;49!UBERON:0001280;1.88e-08;3!UBERON:0004647;1.88e-08;3!UBERON:0004645;5.94e-07;1!UBERON:0001282;5.94e-07;1!UBERON:0009842;5.94e-07;1!UBERON:0003704;5.94e-07;1!UBERON:0001171;5.94e-07;1!UBERON:0001256;5.94e-07;1!UBERON:0001172;5.94e-07;1!UBERON:0001259;5.94e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001280,1.15e-08,3;UBERON:0004647,1.15e-08,3;UBERON:0005171,1.15e-08,3;UBERON:0001282,3.82e-07,1;UBERON:0009842,3.82e-07,1;UBERON:0003704,3.82e-07,1;UBERON:0001171,3.82e-07,1;UBERON:0001172,3.82e-07,1;UBERON:0004645,7.73e-07,1;UBERON:0001256,7.73e-07,1;UBERON:0001259,7.73e-07,1 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0.975865597581014,0,0,0.313454721478088,0,0.136874425072884,0,0.152826811495903,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0.605399502633369,0,0,0.422510572623884,0.637812899895131,0,0,0.300353785683013,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.144846518960824,0,0.486634870302636,0,0,0.175669571386252,0,0,0,0,0,0,0.238490624305342,0.571994910780128,0,0,0,0,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0.949265659568129,0.366403487860815,0,0,0.436094052142534,0,0,0.264818361626438,0,0,0,1.06748995729705,0.74000264525148,0.622422070799533,0,0.326923806226917,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,1.18800285728205,0.247266929278557,0,0,0,0,0,0.877955241761676,0,0.300476117813194,0,0,0,0,0,0,0,0,0.337552664482532,0,0,0.184099797284599,0,0,0.201504196455281,0.339121184620975,0.386521706326594,0.272746120590835,0,3.17131635936948,0.265059536642971,0.929551542956147,1.55491582523056,2.52320850875628,0,0,0,0,0,0,0.473227200159376,0.505754070234305,0,0.330881918197182,0.871517776369625,0.237270619111097,0,0.784885860501384,0,0,1.40241773803446,0,0,0,0,0,1.32438929824395,0.122988438543114,0,0.329250856225877,0,0.100528972411631,0.185176890317059,0,0,0,0.115930404975077,0.234817388471643,0.721832238805369,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,0.414656231081544,0.432359860250884,0.50496973370552,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0.07333828582095,0,0,0,0.531876233169741,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0,0,0.254094624222463,28.6307678486768,29.3849748855524,26.1325373921584,22.9657950595139,0,0,0,0.12269149171914,0.500170521059677,0,0.415941723061614,0.178428988797162,0,0,0,2.27407504055985,0,0.664225598535437,0.184369168541703,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0.248107807818777,0.460385919864187,0.561320188866147,0.128139149255701,0.511707249066704,0.482561763430822,0,0,0,0,0.519254429183621,0.116210378459959,0.604297247958111,1.60405176242628,0.644566922551274,0,0,0.524497659837696,0.451199612907412,0,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0,0,0.509752546090077,0,0,0,0,0,0,0,0.103041011647722,0.915694648183434,0.660075999364704,0,0.650060246036521,0,0,0,0,0,0.107420244868274,0,0,0,0.330569830721956,0.192190067365106,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0.274537029736055,0,0,0,0.421258456238981,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.192444225451024,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0.284567373393656,1.11598390910176,0.199579371432817,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0.111443384277478,0,0.23874448473769,0,0,0,0,0.556543525114529,0,0.211125408127993,0.19924798825107,0,0,0.20453736500431,0,0,0,0.537063524026827,0,0,0,0,0,0,9.98068990005971,0.520855522170466,0.0874599999961957,0,0.1137934482855,0.254253650292766,0,0,1.45802306691627,1.21537496453305,0,0,0,0,0,0,0.32681539055697,0.139423744278603,0.153900517007594,1.48124672601102,0.23056390438806,0.179515288819544,0,0.638002319463839,0.366390373607449,1.06606955203727,0,0,0.166211681900156,0,0,0,0,0.158936578980379,0.210998064528027,0.163232808159148,0.141353071433941,0,0,0.0884575645033392,0,0,0,0.104421949505455,0,0,0,0,0.19566461893209,0,0,0,14.997565319894,0.063186579628488,0.450970258243478,0.622129148383483,0,0,0,0,0,0.970722711091971,0.520679215005393,0.0979923974143777,0.261177619741208,0,0,0.19351266257817,0.219267951258557,0.0821154570532092,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0.426905989478705,0.599428828746391,0.144090417154106,1.25990255782507,0,0,0,0,0.271808412147228,0.418411385249333,0.101998217636322,0.288950589901519,0,0,1.27746588066972,0.429765441419957,1.31443677139657,0,0,0.717873024576814,0,0,0,0,0.360299883542404,0,0.0787831823072236,0,0,0,0,0,0,1.28602518772015,0.550157746388935,0.83088067605837,0,0,0,0,0.0788057072991982,0.104909176269996,0,0.35857467866569,0,0,0,0,0,0.864221491201268,0,1.19730191562487,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0.968440444553616,0,0,0.285465333544967,0,0.936669811613763,0.28984205722165,0.298509605773748,0,0,0.189403005275089,0,0,0,0.151230923763239,0.15543720058278,0.147855149989634,0.159296767163702,0,0,0,0,0,0.150257608997218,0.761610424337591,0,0.545545977607678,0.107410557042488,0.928067519756987,0,0,0.343395705182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| ||
|short_description=p15@SOX4 | |short_description=p15@SOX4 | ||
}} | }} |
Latest revision as of 03:48, 17 September 2015
Short description: | p15@SOX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_SOX4_5end |
Coexpression cluster: | C214_Neurons_Neural_duodenum_temporal_occipital_parietal_brain |
Association with transcript: | 135bp_to_ENST00000543472_5end |
EntrezGene: | SOX4 |
HGNC: | 11200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 7.82e-19 | 8 |
neuron | 2.37e-16 | 6 |
neuroblast | 2.37e-16 | 6 |
electrically signaling cell | 2.37e-16 | 6 |
embryonic stem cell | 2.98e-11 | 5 |
peptide hormone secreting cell | 3.20e-07 | 1 |
enteroendocrine cell | 3.20e-07 | 1 |
type D enteroendocrine cell | 3.20e-07 | 1 |
somatostatin secreting cell | 3.20e-07 | 1 |
pancreatic D cell | 3.20e-07 | 1 |
progenitor cell of endocrine pancreas | 3.20e-07 | 1 |
bladder cell | 7.73e-07 | 1 |
lower urinary tract cell | 7.73e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
liver parenchyma | 1.15e-08 | 3 |
liver lobule | 1.15e-08 | 3 |
hepatic duct | 1.15e-08 | 3 |
intralobular bile duct | 3.82e-07 | 1 |
acinus | 3.82e-07 | 1 |
intrahepatic bile duct | 3.82e-07 | 1 |
portal lobule | 3.82e-07 | 1 |
hepatic acinus | 3.82e-07 | 1 |
urinary bladder urothelium | 7.73e-07 | 1 |
wall of urinary bladder | 7.73e-07 | 1 |
mucosa of urinary bladder | 7.73e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 3.20e-07 | 1 |