FFCP PHASE1:Hg19::chr15:33023323..33023333,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26585 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |||
|TSSclassifier=strong | |||
|UniProt=O60565 | |||
|association_with_transcript=431bp_to_AF045800,BC069525,CU686886,HQ448400_5end | |||
|cluster_id=chr15:33023323..33023333,+ | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_20_at_GREM1_5end | |||
|id=chr15:33023323..33023333,+ | |||
|ontology_enrichment_celltype=CL:0000057!7.52e-26!75;CL:0000055!5.35e-22!180;CL:0002620!6.18e-21!23;CL:0000048!2.84e-16!430;CL:0000723!1.28e-15!436;CL:0000034!8.81e-15!444;CL:0002334!1.69e-13!12;CL:0002320!3.26e-11!365;CL:0000134!6.12e-11!358;CL:0002371!1.08e-08!591;CL:0000219!1.71e-08!390;CL:0000144!8.13e-08!625 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.59e-20;23!CL:0002334;1.44e-12;12!CL:0002579;1.82e-10;3!CL:0002615;3.87e-10;3!CL:0000057;1.29e-09;73!CL:0000197;6.04e-09;6!CL:0000098;6.04e-09;6!CL:0002167;6.04e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.83e-28,76;CL:0002620,2.48e-20,23;CL:0002334,1.52e-12,12;CL:0002579,1.75e-10,3;CL:0000048,2.10e-10,427;CL:0000723,4.34e-10,433;CL:0002615,5.16e-10,3;CL:0000034,1.11e-09,441;CL:0000134,1.61e-09,354;CL:0002320,4.01e-09,361;CL:0000197,4.52e-09,6;CL:0000098,4.52e-09,6;CL:0002167,4.52e-09,6;CL:0000219,2.22e-08,386;CL:0000136,2.54e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.72e-14!14;DOID:17!2.62e-08!5;DOID:450!2.62e-08!5;DOID:66!2.62e-08!5;DOID:423!2.62e-08!5;DOID:0080000!2.62e-08!5;DOID:11722!2.62e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:17;9.76e-16;5!DOID:450;9.76e-16;5!DOID:66;9.76e-16;5!DOID:423;9.76e-16;5!DOID:0080000;9.76e-16;5!DOID:11722;9.76e-16;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.84e-16,5;DOID:450,6.84e-16,5;DOID:66,6.84e-16,5;DOID:423,6.84e-16,5;DOID:0080000,6.84e-16,5;DOID:11722,6.84e-16,5 | |||
|ontology_enrichment_uberon=UBERON:0002097!5.97e-15!40;UBERON:0002199!9.62e-14!45;UBERON:0002416!9.62e-14!45;UBERON:0003102!6.88e-12!95;UBERON:0000914!7.29e-12!83;UBERON:0002329!7.29e-12!83;UBERON:0003077!7.29e-12!83;UBERON:0003059!7.29e-12!83;UBERON:0007282!7.29e-12!83;UBERON:0009618!7.29e-12!83;UBERON:0007285!7.29e-12!83;UBERON:0002384!2.34e-11!375;UBERON:0003688!1.15e-09!6;UBERON:0002358!1.15e-09!6;UBERON:0003684!1.15e-09!6;UBERON:0001178!1.15e-09!6;UBERON:0004290!7.20e-09!70;UBERON:0005256!2.77e-08!143;UBERON:0002100!5.59e-08!216;UBERON:0002118!2.15e-07!5;UBERON:0004532!2.15e-07!5;UBERON:0000475!2.32e-07!365;UBERON:0000992!3.54e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;6.96e-19;6!UBERON:0002358;6.96e-19;6!UBERON:0003684;6.96e-19;6!UBERON:0001178;6.96e-19;6!UBERON:0004457;2.32e-12;9!UBERON:0000042;2.32e-12;9!UBERON:0002097;2.26e-11;41!UBERON:0002199;7.18e-08;46!UBERON:0002416;7.18e-08;46!UBERON:0005406;1.35e-07;2!UBERON:0002384;8.66e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,8.91e-19,6;UBERON:0002358,8.91e-19,6;UBERON:0003684,8.91e-19,6;UBERON:0001178,8.91e-19,6;UBERON:0002097,4.83e-14,41;UBERON:0002199,3.98e-12,46;UBERON:0002416,3.98e-12,46;UBERON:0002384,2.74e-09,371;UBERON:0003102,4.79e-09,99;UBERON:0004457,4.80e-09,12;UBERON:0000042,4.80e-09,12;UBERON:0005406,1.28e-07,2 | |||
|phase1_expression=0.908391896352783,3.21150785836475,1.26858963686374,3.00219895059391,1.34088328328186,4.36169262050184,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0.662794751455832,2.6893005858071,2.41077811209591,2.19093027116212,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0,0.397227542439656,1.72101972449288,0.354668382198357,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0.570471821544449,0.149448680551801,0.117434498643765,0.485618833104395,0.280901613404497,0,0,0,1.18800285728205,4.20353779773547,0,0,0,0.250237039743928,0,2.19488810440419,3.98434134538726,1.20190447125277,0,3.94657198515496,1.92201649936711,2.11931901159562,1.80054657650641,1.03052529238439,1.54584324027377,1.48893485065272,0.506328996723799,1.75386609290158,2.27190396819703,1.56484827691909,0,3.19508633264953,1.41052937518696,1.69560592310488,0,0,0,0,0,0,0,0,0,4.69348596989448,3.85944562915731,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,2.12750493267896,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,1.01346914667305,2.05476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87173775377726,4.81758269752337,3.31175071571263,1.28855556491985,0,0,1.03473071292505,0,0.737476674166813,0.60818530127658,0,0,0,0,0,0,0,0,2.23297027036899,0.767309866440312,5.05188169979532,1.40953064181271,2.55853624533352,3.05622450172854,1.48418066444991,0.771048469013278,0,0.0821271560138091,2.07701771673448,0.464841513839837,0,0,0,0.229628896329213,0.728364672026868,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,3.21367859688319,0.096670718292122,0,0,0,0.107420244868274,0,0.170453254832202,0,0,0,0,0,0,3.1481234683064,0,0,0,0,0.37064843820784,0,0.372158369359667,0,0,0,0,0,0,0,1.09814811894422,0.942499218765491,0.202182481573316,0,0,0,0.487426979262569,0,0.136499911407986,0.282810863907425,0,0.551365343546124,0,0,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.933118762985422,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.68389848605125,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08599920350743,0,0,0,0,0.681552087141687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.701139929541673,0,0.189403005275089,0,0.889811221596536,0,0.302461847526478,0.310874401165561,1.33069634990671,0.796483835818512,0.449803112163605,0.155262956876259,0.829412415681711,1.59505028734797,1.04349012362347,0.300515217994437,0.380805212168795,1.22061219961398,2.18218391043071,0.322231671127465,0.928067519756987,1.19428766609585,1.60011105865261,0.343395705182793,2.35724642136143,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,2.54403480522735,0,0,2.82140754952547,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,1.52934403219035,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,2.23197010900051,0,2.59575937274273,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | |||
|short_description=p20@GREM1 | |||
}} |
Latest revision as of 04:40, 17 September 2015
Short description: | p20@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 431bp_to_AF045800, BC069525, CU686886, HQ448400_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | O60565 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.83e-28 | 76 |
skin fibroblast | 2.48e-20 | 23 |
preadipocyte | 1.52e-12 | 12 |
omentum preadipocyte | 1.75e-10 | 3 |
multi fate stem cell | 2.10e-10 | 427 |
somatic stem cell | 4.34e-10 | 433 |
adipocyte of omentum tissue | 5.16e-10 | 3 |
stem cell | 1.11e-09 | 441 |
mesenchymal cell | 1.61e-09 | 354 |
connective tissue cell | 4.01e-09 | 361 |
receptor cell | 4.52e-09 | 6 |
sensory epithelial cell | 4.52e-09 | 6 |
olfactory epithelial cell | 4.52e-09 | 6 |
motile cell | 2.22e-08 | 386 |
fat cell | 2.54e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 8.91e-19 | 6 |
peritoneum | 8.91e-19 | 6 |
abdominal cavity | 8.91e-19 | 6 |
visceral peritoneum | 8.91e-19 | 6 |
skin of body | 4.83e-14 | 41 |
integument | 3.98e-12 | 46 |
integumental system | 3.98e-12 | 46 |
connective tissue | 2.74e-09 | 371 |
surface structure | 4.79e-09 | 99 |
cavity lining | 4.80e-09 | 12 |
serous membrane | 4.80e-09 | 12 |
perirenal fat | 1.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.84e-16 | 5 |
myotonic disease | 6.84e-16 | 5 |
muscle tissue disease | 6.84e-16 | 5 |
myopathy | 6.84e-16 | 5 |
muscular disease | 6.84e-16 | 5 |
myotonic dystrophy | 6.84e-16 | 5 |