FFCP PHASE1:Hg19::chr10:135379132..135379143,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93426 | |EntrezGene=93426 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28852 | |HGNC=28852 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N0S2 | |UniProt=Q8N0S2 | ||
|association_with_transcript=0bp_to_ENST00000303903,ENST00000343131,NM_001143763,NM_001143764,uc001lno.2,uc009ybn.2_5end | |association_with_transcript=0bp_to_ENST00000303903,ENST00000343131,NM_001143763,NM_001143764,uc001lno.2,uc009ybn.2_5end | ||
|cluster_id=chr10:135379132..135379143,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_SYCE1_5end | |description=CAGE_peak_4_at_SYCE1_5end | ||
|id=chr10:135379132..135379143,- | |id=chr10:135379132..135379143,- | ||
|ontology_enrichment_celltype=CL:0002573!1.35e-07!2 | |ontology_enrichment_celltype=CL:0002573!1.35e-07!2 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.99e-21;10!UBERON:0005564;6.99e-21;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;1.29e-13;4!DOID:1325;2.35e-08;7!DOID:3904;2.35e-08;7!DOID:3905;8.85e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.29e-13,4;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7;DOID:3905,8.85e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0002619!3.07e-22!22;UBERON:0000956!1.99e-19!25;UBERON:0000203!1.99e-19!25;UBERON:0001869!7.12e-18!32;UBERON:0001893!1.03e-16!34;UBERON:0001950!3.44e-16!20;UBERON:0002780!3.83e-16!41;UBERON:0001890!3.83e-16!41;UBERON:0006240!3.83e-16!41;UBERON:0003080!1.05e-15!42;UBERON:0000073!7.26e-15!94;UBERON:0001016!7.26e-15!94;UBERON:0002616!2.19e-14!59;UBERON:0002791!2.33e-14!33;UBERON:0002020!6.89e-14!34;UBERON:0003528!6.89e-14!34;UBERON:0007023!2.09e-13!115;UBERON:0000955!2.21e-13!69;UBERON:0006238!2.21e-13!69;UBERON:0005743!3.47e-13!86;UBERON:0001049!7.63e-13!57;UBERON:0005068!7.63e-13!57;UBERON:0006241!7.63e-13!57;UBERON:0007135!7.63e-13!57;UBERON:0000200!1.34e-12!6;UBERON:0001017!2.29e-12!82;UBERON:0003056!9.17e-12!61;UBERON:0001954!8.96e-11!2;UBERON:0003022!8.96e-11!2;UBERON:0002421!8.96e-11!2;UBERON:0002600!8.96e-11!2;UBERON:0003075!3.08e-10!86;UBERON:0007284!3.08e-10!86;UBERON:0000153!7.86e-10!129;UBERON:0007811!7.86e-10!129;UBERON:0002346!1.22e-09!90;UBERON:0000033!2.76e-09!123;UBERON:0003135!1.41e-07!11;UBERON:0004121!2.03e-07!169;UBERON:0000924!3.76e-07!173;UBERON:0006601!3.76e-07!173;UBERON:0002771!5.83e-07!3;UBERON:0000025!7.86e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.65e-26;8!UBERON:0003135;4.28e-19;11!UBERON:0000991;1.53e-10;21!UBERON:0003101;4.14e-10;22!UBERON:0000079;4.14e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.65e-26,8;UBERON:0003135,4.28e-19,11;UBERON:0000991,1.53e-10,21;UBERON:0009196,1.53e-10,21;UBERON:0009117,1.53e-10,21;UBERON:0005564,1.53e-10,21;UBERON:0004176,4.14e-10,22;UBERON:0003101,4.14e-10,22;UBERON:0000079,4.14e-10,22 | |||
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|short_description=p4@SYCE1 | |short_description=p4@SYCE1 | ||
}} | }} |
Latest revision as of 06:26, 17 September 2015
Short description: | p4@SYCE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SYCE1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000303903, ENST00000343131, NM_001143763, NM_001143764, uc001lno.2, uc009ybn.2_5end |
EntrezGene: | SYCE1 |
HGNC: | 28852 |
UniProt: | Q8N0S2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 8.65e-26 | 8 |
male reproductive organ | 4.28e-19 | 11 |
gonad | 1.53e-10 | 21 |
indifferent external genitalia | 1.53e-10 | 21 |
indifferent gonad | 1.53e-10 | 21 |
gonad primordium | 1.53e-10 | 21 |
external genitalia | 4.14e-10 | 22 |
male organism | 4.14e-10 | 22 |
male reproductive system | 4.14e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.29e-13 | 4 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
lung carcinoma | 8.85e-07 | 9 |