FFCP PHASE1:Hg19::chr9:35732561..35732587,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:35732561..35732587,+
|short_description=p3@CREB3
|description=CAGE_peak_3_at_CREB3_5end
|association_with_transcript=-7bp_to_ENST00000486056_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10488 | |EntrezGene=10488 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2347 | |HGNC=2347 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_ENST00000486056_5end | |||
|cluster_id=chr9:35732561..35732587,+ | |||
|description=CAGE_peak_3_at_CREB3_5end | |||
|id=chr9:35732561..35732587,+ | |||
|ontology_enrichment_celltype=CL:0000192!2.15e-11!42;CL:0000514!2.15e-11!42;CL:0000359!1.23e-10!32;CL:0000791!1.33e-07!18;CL:0000789!1.33e-07!18;CL:0002420!1.33e-07!18;CL:0002419!1.33e-07!18;CL:0000790!1.33e-07!18;CL:0000183!1.90e-07!59;CL:0000542!2.66e-07!53;CL:0000051!2.66e-07!53;CL:0000838!3.21e-07!52;CL:0000187!6.92e-07!54;CL:0000680!9.72e-07!57;CL:0000056!9.72e-07!57;CL:0000355!9.72e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.39e-10;32!CL:0000791;1.59e-07;18!CL:0000789;1.59e-07;18!CL:0002419;1.59e-07;18!CL:0000192;3.25e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.20e-10,32;CL:0000192,1.67e-10,43;CL:0000514,1.67e-10,43;CL:0000791,1.30e-07,18;CL:0000789,1.30e-07,18;CL:0002420,1.30e-07,18;CL:0002419,1.30e-07,18;CL:0000790,1.30e-07,18;CL:0000542,2.78e-07,53;CL:0000051,2.78e-07,53;CL:0000838,3.35e-07,52 | |||
|ontology_enrichment_development_v019=CL:0000790;1.59e-07;18!CL:0000514;3.25e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.55e-12!115;UBERON:0001637!1.99e-08!42;UBERON:0003509!1.99e-08!42;UBERON:0004572!1.99e-08!42;UBERON:0001049!2.73e-08!57;UBERON:0005068!2.73e-08!57;UBERON:0006241!2.73e-08!57;UBERON:0007135!2.73e-08!57;UBERON:0002616!4.06e-08!59;UBERON:0000477!6.18e-08!286;UBERON:0000025!6.50e-08!194;UBERON:0004111!1.53e-07!241;UBERON:0001981!3.66e-07!60;UBERON:0007500!3.66e-07!60;UBERON:0004537!3.66e-07!60;UBERON:0006965!3.66e-07!60;UBERON:0004872!3.82e-07!84;UBERON:0004573!4.06e-07!33;UBERON:0004571!4.06e-07!33 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.49e-12,114;UBERON:0001049,6.02e-09,56;UBERON:0005068,6.02e-09,56;UBERON:0006241,6.02e-09,56;UBERON:0007135,6.02e-09,56;UBERON:0000073,7.93e-09,53;UBERON:0002616,7.93e-09,53;UBERON:0000025,1.31e-08,192;UBERON:0001637,1.95e-08,42;UBERON:0003509,1.95e-08,42;UBERON:0004572,1.95e-08,42;UBERON:0004111,3.23e-08,240;UBERON:0007500,1.98e-07,59;UBERON:0001981,1.98e-07,59;UBERON:0004537,1.98e-07,59;UBERON:0006965,1.98e-07,59;UBERON:0004872,2.14e-07,83;UBERON:0004573,3.99e-07,33;UBERON:0004571,3.99e-07,33;UBERON:0000955,4.64e-07,68;UBERON:0006238,4.64e-07,68;UBERON:0010314,4.73e-07,132;UBERON:0003075,5.50e-07,82;UBERON:0007284,5.50e-07,82;UBERON:0002780,9.29e-07,41;UBERON:0001890,9.29e-07,41;UBERON:0003080,9.29e-07,41;UBERON:0006240,9.29e-07,41 | |||
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| ||
|short_description=p3@CREB3 | |||
}} | }} |
Latest revision as of 08:44, 17 September 2015
Short description: | p3@CREB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CREB3_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENST00000486056_5end |
EntrezGene: | CREB3 |
HGNC: | 2347 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.20e-10 | 32 |
smooth muscle cell | 1.67e-10 | 43 |
smooth muscle myoblast | 1.67e-10 | 43 |
mature alpha-beta T cell | 1.30e-07 | 18 |
alpha-beta T cell | 1.30e-07 | 18 |
immature T cell | 1.30e-07 | 18 |
mature T cell | 1.30e-07 | 18 |
immature alpha-beta T cell | 1.30e-07 | 18 |
lymphocyte | 2.78e-07 | 53 |
common lymphoid progenitor | 2.78e-07 | 53 |
lymphoid lineage restricted progenitor cell | 3.35e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.49e-12 | 114 |
neural tube | 6.02e-09 | 56 |
neural rod | 6.02e-09 | 56 |
future spinal cord | 6.02e-09 | 56 |
neural keel | 6.02e-09 | 56 |
regional part of nervous system | 7.93e-09 | 53 |
regional part of brain | 7.93e-09 | 53 |
tube | 1.31e-08 | 192 |
artery | 1.95e-08 | 42 |
arterial blood vessel | 1.95e-08 | 42 |
arterial system | 1.95e-08 | 42 |
anatomical conduit | 3.23e-08 | 240 |
epithelial tube open at both ends | 1.98e-07 | 59 |
blood vessel | 1.98e-07 | 59 |
blood vasculature | 1.98e-07 | 59 |
vascular cord | 1.98e-07 | 59 |
splanchnic layer of lateral plate mesoderm | 2.14e-07 | 83 |
systemic artery | 3.99e-07 | 33 |
systemic arterial system | 3.99e-07 | 33 |
brain | 4.64e-07 | 68 |
future brain | 4.64e-07 | 68 |
structure with developmental contribution from neural crest | 4.73e-07 | 132 |
neural plate | 5.50e-07 | 82 |
presumptive neural plate | 5.50e-07 | 82 |
regional part of forebrain | 9.29e-07 | 41 |
forebrain | 9.29e-07 | 41 |
anterior neural tube | 9.29e-07 | 41 |
future forebrain | 9.29e-07 | 41 |