FFCP PHASE1:Hg19::chr11:22851367..22851397,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=258010 | |EntrezGene=258010 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25238 | |HGNC=25238 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NHG7 | |UniProt=Q8NHG7 | ||
|association_with_transcript=0bp_to_NM_148893,uc001mqp.3_5end | |association_with_transcript=0bp_to_NM_148893,uc001mqp.3_5end | ||
|cluster_id=chr11:22851367..22851397,- | |||
|description=CAGE_peak_1_at_SVIP_5end | |description=CAGE_peak_1_at_SVIP_5end | ||
|id=chr11:22851367..22851397,- | |id=chr11:22851367..22851397,- | ||
|ontology_enrichment_celltype=CL:0000838!4.11e-17!52;CL:0000542!5.55e-16!53;CL:0000051!5.55e-16!53;CL:0000084!1.12e-11!25;CL:0000827!1.12e-11!25;CL:0000791!8.00e-11!18;CL:0000789!8.00e-11!18;CL:0002420!8.00e-11!18;CL:0002419!8.00e-11!18;CL:0000790!8.00e-11!18;CL:0000625!7.74e-08!11;CL:0000236!8.70e-07!14 | |ontology_enrichment_celltype=CL:0000838!4.11e-17!52;CL:0000542!5.55e-16!53;CL:0000051!5.55e-16!53;CL:0000084!1.12e-11!25;CL:0000827!1.12e-11!25;CL:0000791!8.00e-11!18;CL:0000789!8.00e-11!18;CL:0002420!8.00e-11!18;CL:0002419!8.00e-11!18;CL:0000790!8.00e-11!18;CL:0000625!7.74e-08!11;CL:0000236!8.70e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.04e-11;25!CL:0000791;7.41e-11;18!CL:0000789;7.41e-11;18!CL:0002419;7.41e-11;18!CL:0000542;1.30e-09;53!CL:0000625;7.69e-08;11!CL:0000236;8.78e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.96e-17,52;CL:0000542,5.26e-16,53;CL:0000051,5.26e-16,53;CL:0000084,1.12e-11,25;CL:0000827,1.12e-11,25;CL:0000791,7.99e-11,18;CL:0000789,7.99e-11,18;CL:0002420,7.99e-11,18;CL:0002419,7.99e-11,18;CL:0000790,7.99e-11,18;CL:0000625,7.74e-08,11;CL:0000236,8.70e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;7.41e-11;18!CL:0000051;1.30e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.81e-21!115;UBERON:0000025!1.53e-08!194;UBERON:0001049!3.13e-08!57;UBERON:0005068!3.13e-08!57;UBERON:0006241!3.13e-08!57;UBERON:0007135!3.13e-08!57;UBERON:0003075!1.53e-07!86;UBERON:0007284!1.53e-07!86;UBERON:0004111!6.48e-07!241 | |ontology_enrichment_uberon=UBERON:0007023!2.81e-21!115;UBERON:0000025!1.53e-08!194;UBERON:0001049!3.13e-08!57;UBERON:0005068!3.13e-08!57;UBERON:0006241!3.13e-08!57;UBERON:0007135!3.13e-08!57;UBERON:0003075!1.53e-07!86;UBERON:0007284!1.53e-07!86;UBERON:0004111!6.48e-07!241 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.66e-21,114;UBERON:0000025,1.15e-08,192;UBERON:0001049,5.11e-08,56;UBERON:0005068,5.11e-08,56;UBERON:0006241,5.11e-08,56;UBERON:0007135,5.11e-08,56;UBERON:0000073,2.23e-07,53;UBERON:0002616,2.23e-07,53;UBERON:0003075,4.69e-07,82;UBERON:0007284,4.69e-07,82;UBERON:0004111,6.67e-07,240 | |||
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| ||
|short_description=p1@SVIP | |short_description=p1@SVIP | ||
}} | }} |
Latest revision as of 09:51, 17 September 2015
Short description: | p1@SVIP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SVIP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_148893, uc001mqp.3_5end |
EntrezGene: | SVIP |
HGNC: | 25238 |
UniProt: | Q8NHG7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.96e-17 | 52 |
lymphocyte | 5.26e-16 | 53 |
common lymphoid progenitor | 5.26e-16 | 53 |
T cell | 1.12e-11 | 25 |
pro-T cell | 1.12e-11 | 25 |
mature alpha-beta T cell | 7.99e-11 | 18 |
alpha-beta T cell | 7.99e-11 | 18 |
immature T cell | 7.99e-11 | 18 |
mature T cell | 7.99e-11 | 18 |
immature alpha-beta T cell | 7.99e-11 | 18 |
CD8-positive, alpha-beta T cell | 7.74e-08 | 11 |
B cell | 8.70e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.66e-21 | 114 |
tube | 1.15e-08 | 192 |
neural tube | 5.11e-08 | 56 |
neural rod | 5.11e-08 | 56 |
future spinal cord | 5.11e-08 | 56 |
neural keel | 5.11e-08 | 56 |
regional part of nervous system | 2.23e-07 | 53 |
regional part of brain | 2.23e-07 | 53 |
neural plate | 4.69e-07 | 82 |
presumptive neural plate | 4.69e-07 | 82 |
anatomical conduit | 6.67e-07 | 240 |