FFCP PHASE1:Hg19::chr2:45236579..45236596,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:45236579..45236596,- to FFCP PHASE1:Hg19::chr2:45236579..45236596,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10736 | |EntrezGene=10736 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10888 | |HGNC=10888 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NPC8 | |UniProt=Q9NPC8 | ||
|association_with_transcript=-10bp_to_ENST00000303077_5end | |||
|cluster_id=chr2:45236579..45236596,- | |||
|coexpression_cluster_id=C1906 | |||
|description=CAGE_peak_2_at_SIX2_5end | |||
|id=chr2:45236579..45236596,- | |||
|ontology_enrichment_celltype=CL:0000055!7.23e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000327;3.14e-10;15!CL:0000499;5.23e-10;28!CL:0000153;7.38e-10;9!CL:0000447;7.38e-10;9!CL:0002556;2.22e-08;6!CL:0000669;1.35e-07;4!CL:0000188;7.77e-07;9!CL:0000138;9.12e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000327,2.45e-10,15;CL:0000499,5.11e-10,28;CL:0000153,6.39e-10,9;CL:0000447,6.39e-10,9;CL:0002556,1.82e-08,6;CL:0000669,1.40e-07,4;CL:0000151,1.53e-07,36;CL:0000188,7.08e-07,9;CL:0000058,9.64e-07,6;CL:0000138,9.64e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!1.04e-10!72;UBERON:0000078!1.86e-10!18;UBERON:0000065!6.46e-08!53;UBERON:0000165!1.22e-07!28;UBERON:0000930!1.22e-07!28;UBERON:0003104!3.67e-07!238;UBERON:0009142!3.67e-07!238;UBERON:0000072!7.07e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0001434;3.07e-12;36!UBERON:0000165;1.46e-09;28!UBERON:0000075;3.22e-09;16!UBERON:0002204;9.77e-09;70!UBERON:0001758;2.22e-08;6!UBERON:0003672;2.22e-08;6!UBERON:0004905;3.17e-08;8!UBERON:0000982;3.17e-08;8!UBERON:0004770;3.17e-08;8!UBERON:0001044;4.32e-08;6!UBERON:0003293;4.32e-08;6!UBERON:0003294;4.32e-08;6!UBERON:0010047;4.32e-08;6!UBERON:0003408;4.32e-08;6!UBERON:0000167;4.32e-08;6!UBERON:0001134;6.65e-08;16!UBERON:0002036;6.65e-08;16!UBERON:0004765;9.01e-08;26!UBERON:0005284;3.17e-07;5!UBERON:0003129;4.83e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000165,8.79e-11,29;UBERON:0000930,8.79e-11,29;UBERON:0000075,2.46e-09,16;UBERON:0001758,1.82e-08,6;UBERON:0003672,1.82e-08,6;UBERON:0004905,2.19e-08,8;UBERON:0000982,2.19e-08,8;UBERON:0004770,2.19e-08,8;UBERON:0001044,3.23e-08,6;UBERON:0003293,3.23e-08,6;UBERON:0003294,3.23e-08,6;UBERON:0010047,3.23e-08,6;UBERON:0000167,3.23e-08,6;UBERON:0011137,4.07e-07,14;UBERON:0003129,4.10e-07,7;UBERON:0005284,4.11e-07,5;UBERON:0001004,8.59e-07,74 | |||
|phase1_expression=0.181678379270557,1.07050261945492,0.563817616383885,0,0,0.872338524100369,2.53299878168311,0.631719873426831,4.70134130759709,0,0,0,0,3.83675694176145,5.63375538737457,0,0,0,0,0,0.204000691244253,0,0,0,0.753255837568817,0,0,0,0,0,0,3.67768489791571,2.409647350226,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,0,0.255725123687061,5.06014813338393,6.01605492763067,6.0835537963546,3.1811437882044,3.40644409211845,0,0.221729397462564,0.087834785693126,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0.183201743930407,0,0,3.92484646928281,2.98183171017191,0,0,0,0,0.560677600142307,0,0.24666754841716,3.11211035399766,0.67355336034844,0.326923806226917,11.04909221808,4.60940739583999,0,0.312160076830321,1.1409436430889,0.298897361103602,0.23486899728753,0,0,9.59524604897998,4.54486974053541,14.2589578022556,0,3.70900393917835,0,0.718618141816238,2.35670559535693,3.503318556415,3.60183350129438,1.31693286264251,3.37136575378922,6.30999847407706,0.567160915800105,0,0.213557388818567,0.423863802319124,0,0,0,0,0,0,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,2.12952240071719,2.36018566109342,0.723033089650446,1.54411561825352,1.08939722046203,1.18635309555548,1.07865046528132,0.98110732562673,0.769494313892781,0,4.20725321410337,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,1.03993478527958,1.44331342025273,0.115930404975077,0,0,0,0,0,0.858486162094873,0,0,0,0,0.335964256397719,0,0.0895585227028483,0,0,0,0,0.414656231081544,0.576479813667846,0.25248486685276,0,0,0,0,0,0,0,5.27016096423195,3.48768055066624,3.59357600522655,0,3.57656445851882,0.845302752556,0,0,2.82928111688356,0,1.3321108950805,0,0,0,2.60588947434988,0,0,5.12446941001296,1.74306691720059,3.09916272664377,0,0,0,11.2623682081044,27.5668646001873,2.85273810081437,1.73737568001095,1.64381058040307,3.04403637507822,0,0,0,0,0,0,0,0,0,0,0,0,2.20844685094452,0.500170521059677,4.88277042659524,3.11956292296211,1.60586089917446,1.73472656537328,0.468565659970853,3.00946099727719,2.27407504055985,0,1.99267679560631,1.47495334833363,0,19.1885134313486,10.6374461381365,0,0,0,0,4.99306318531491,0.604780586659361,0,0,0.561320188866147,0.256278298511402,0.511707249066704,0.804269605718038,0,0,0.532685175939381,0.657017248110473,1.55776328755086,0.232420756919918,0.120859449591622,0,0,2.06666006696292,0.364182336013434,1.18011973463482,0,0.0770153371044148,4.70609861506113,0,0.105551628892876,0,0,1.29549549661284,3.08454505380579,8.12839312631558,5.51858751240339,0.254876273045038,0,0.447749509444357,0,0,0,0,0.325378394664303,0,0.183138929636687,0.247528499761764,0.574265537996172,0,0,3.28680442193215,5.39170159901255,3.07007349452259,0.413509717453592,0,2.0302337147992,1.70453254832202,2.8490251406956,1.15699440752685,0.384380134730212,0.893288987462089,0.6069466851333,0,0,0,0,0,0,0.74129687641568,0,2.60510858551767,1.2655176988749,2.09693213316207,0.511795582622668,0.42793898803392,0.318203247925937,0,0.179872457583315,0,0,0.606547444719948,0,0,0,1.94970791705028,0,0.272999822815972,0,1.13008116620243,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0.354761064070598,4.64436797654861,2.96365403663912,0,0,1.82822014178473,3.35151137767894,0,0.0941438007767792,3.01353760869861,0,3.10401107475673,0.918893600827838,0,0,0,0,0,0,0,0,0,0,4.41072388765857,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0.921722292925374,0.671028323677248,1.33479313369527,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.111308705022906,0,0.211125408127993,0.597743964753209,0,2.77126022639704,0,0,0,0,0,0,0.0986434056369336,0,5.55684950723184,0,0.0927680981618513,0,0.260427761085233,9.09583999960435,0.724999575434793,1.0241410345695,0,0,0,0,0.694499979733169,0,0,0,0,0,0,0.10893846351899,1.81250867562184,0.538651809526579,0,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0.649165919226273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65383634439649,0,0.622129148383483,0,0,0,0,0,0,0.347119476670262,0.0979923974143777,4.78825636192214,0,0,3.19295893253981,1.97341156132701,3.12038736802195,0,0,0.225980740780532,2.74083849293502,0,0,0.391102765469606,0,0,1.79828648623917,0,0,0.514784993585894,0.14405479798815,0,0,0,0,0.203996435272644,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0.223171457441873,0,0,0,0,0,0,2.65754200089822,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.314727528809989,0,0.179287339332845,1.53532157855556,0,0,0,0,0,0.653174720218818,0,0,3.06698439213759,0.113312091520126,0,0,0,0,0,2.11444506695002,0.106787412567695,0.314408610199332,0,0,0,0,0,0.544017803369474,1.0027595760908,0,0,1.25643277000187,0,0.122026264901963,0,0,0,0,2.49027542885215,0.499921631848426,0,0,3.76425311517075,5.62001886968258,0.869526171664951,0.597019211547496,0.467426619694449,2.219223446010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| ||
|short_description=p2@SIX2 | |||
}} | }} |
Latest revision as of 09:53, 17 September 2015
Short description: | p2@SIX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SIX2_5end |
Coexpression cluster: | C1906_Multipotent_small_normal_Fibroblast_smallcell_breast_Pericytes |
Association with transcript: | -10bp_to_ENST00000303077_5end |
EntrezGene: | SIX2 |
HGNC: | 10888 |
UniProt: | Q9NPC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extracellular matrix secreting cell | 2.45e-10 | 15 |
stromal cell | 5.11e-10 | 28 |
GAG secreting cell | 6.39e-10 | 9 |
carbohydrate secreting cell | 6.39e-10 | 9 |
fibroblast of periodontium | 1.82e-08 | 6 |
pericyte cell | 1.40e-07 | 4 |
secretory cell | 1.53e-07 | 36 |
cell of skeletal muscle | 7.08e-07 | 9 |
chondroblast | 9.64e-07 | 6 |
chondrocyte | 9.64e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mouth | 8.79e-11 | 29 |
stomodeum | 8.79e-11 | 29 |
subdivision of skeletal system | 2.46e-09 | 16 |
periodontium | 1.82e-08 | 6 |
dentition | 1.82e-08 | 6 |
articulation | 2.19e-08 | 8 |
skeletal joint | 2.19e-08 | 8 |
articular system | 2.19e-08 | 8 |
saliva-secreting gland | 3.23e-08 | 6 |
gland of oral region | 3.23e-08 | 6 |
gland of foregut | 3.23e-08 | 6 |
oral gland | 3.23e-08 | 6 |
oral cavity | 3.23e-08 | 6 |
axial skeletal system | 4.07e-07 | 14 |
skull | 4.10e-07 | 7 |
brain vasculature | 4.11e-07 | 5 |
respiratory system | 8.59e-07 | 74 |