FFCP PHASE1:Hg19::chr1:28832548..28832568,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1104 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1913,10118 | |||
|TSSclassifier=strong | |||
|UniProt=P18754,C9J3R0 | |||
|association_with_transcript=0bp_to_ENST00000373833,ENST00000434290,ENST00000447507_5end | |||
|cluster_id=chr1:28832548..28832568,+ | |||
|description=CAGE_peak_1_at_RCC1_5end,CAGE_peak_1_at_SNHG3_5end | |||
|id=chr1:28832548..28832568,+ | |||
|ontology_enrichment_celltype=CL:0000012!5.94e-32!682;CL:0000548!1.04e-29!679;CL:0000004!1.04e-29!679;CL:0000255!1.04e-29!679;CL:0000003!2.08e-29!722;CL:0000063!2.97e-21!578;CL:0000144!1.14e-18!625;CL:0000542!9.00e-15!53;CL:0000051!9.00e-15!53;CL:0002371!1.47e-14!591;CL:0000838!2.90e-14!52;CL:0000945!2.01e-10!24;CL:0000826!2.01e-10!24;CL:0000034!4.85e-09!444;CL:0000066!7.29e-09!254;CL:0000723!2.89e-07!436;CL:0000048!4.11e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.03e-10;24!CL:0000542;4.39e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.00e-15,53;CL:0000051,9.00e-15,53;CL:0000838,2.90e-14,52;CL:0000945,2.01e-10,24;CL:0000826,2.01e-10,24;CL:0000066,5.62e-09,253;CL:0000034,3.99e-08,441 | |||
|ontology_enrichment_development_v019=CL:0000051;4.39e-09;53 | |||
|ontology_enrichment_disease=DOID:162!3.91e-22!235;DOID:14566!1.10e-20!239;DOID:2531!4.73e-20!51;DOID:0060083!4.73e-20!51;DOID:1240!5.98e-15!39;DOID:0050686!3.63e-14!137;DOID:8692!1.44e-11!31;DOID:0050687!4.48e-08!143;DOID:305!4.54e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:2531;1.84e-12;51!DOID:0060083;1.84e-12;51!DOID:1240;2.59e-12;39!DOID:8692;3.23e-11;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.91e-22,235;DOID:14566,1.10e-20,239;DOID:2531,4.73e-20,51;DOID:0060083,4.73e-20,51;DOID:1240,5.98e-15,39;DOID:0050686,3.63e-14,137;DOID:8692,1.44e-11,31;DOID:0050687,4.48e-08,143;DOID:305,4.54e-08,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=73.2163868460343,49.4572210188171,67.7990683701621,49.0359161930339,50.9535647647108,63.6807122593269,73.4569646688101,76.4381046846465,39.9614011145753,117.21508771122,130.488818410844,96.9879692257965,87.0431028153897,62.9970736566637,35.459519202887,210.437770839406,162.727522566474,199.374654675753,172.240277973049,109.085257456034,63.6482156682069,89.0211408997769,82.7222002808754,98.138962777258,77.5853512695881,601.373503236376,644.982230718774,630.315936759943,130.203575636987,148.541977063621,102.023825265294,166.415241630686,90.6629815522533,178.221432900392,224.112611278813,513.088760047104,648.269770051343,68.6954306579528,56.9546230815202,60.5460329297227,49.2614043327834,57.9769662173973,61.8181362322048,39.8391174256007,60.0822750465207,46.0909716256851,52.0641042668734,57.1523364350338,79.2848309491465,55.2369393258529,71.21267641509,97.6671609439857,99.6315017328828,141.361145704858,85.3186865544353,42.5427687366287,56.4915730619741,83.5971362135715,90.2947482494163,96.2787081228281,88.2285233602677,35.6239404201653,60.6369519169761,49.4420710617925,54.5593368621738,65.8166860641722,61.0365804015663,67.8371396193207,73.5290914972484,122.711697258391,61.7507492686036,105.327403892443,128.167266913558,83.8683486658409,99.0736037837103,86.1697033039425,71.3286807780244,75.3888002064362,58.6648391444342,89.2089887910108,86.5287545816042,85.6694881156133,174.236282016709,129.434850869125,156.553628679986,127.592336547386,123.722359994128,158.056920987483,159.972859213937,131.65941812588,138.887964462705,183.805240273104,154.820657390718,321.176328447033,358.725480308183,549.155816756036,158.548074711749,113.580110434509,88.408644569789,130.238279909338,281.596838371422,268.918353657329,173.395788283041,82.777969465684,172.34445587278,150.864582211446,136.755951201333,87.1020974134591,80.2466174444449,82.8767039202528,82.075955282397,93.896199778157,182.689045815658,190.756610427965,140.077601898669,117.728407062771,206.939066545037,203.083820280234,154.848051515936,103.215194241007,124.356939686576,128.311026000531,112.93133930833,102.389288923535,99.9445812418767,88.5546922644623,91.9663356551572,146.366495581156,107.778398900753,121.218026049903,78.0181972204677,98.5930263764345,54.5973139071874,147.467174172903,105.280961233537,79.3758923905314,76.3474509169055,109.00621094779,93.4949341752631,101.108605242929,92.4021945491686,19.581371786908,93.6238890911833,106.044350636347,34.7265711210511,47.3632885454007,40.2862620372161,78.2249247721522,85.2272417062391,92.8643753323912,224.40275791701,124.734016290388,129.83054760124,76.8818801016653,94.8068725834387,86.6621832111212,194.992303778844,97.423118206837,83.9608379940636,99.7467426038717,105.944110399706,256.211699627139,53.6936526605973,176.845941646363,68.8620655699496,187.261530211715,86.8928672063277,76.2379722872091,499.812238138779,449.951922635293,111.569862053618,44.8053419282615,34.9002237733493,143.911037207036,79.515512271251,136.760952597746,480.512917171171,263.316017847411,89.0217639317876,134.562624034154,337.326826505868,53.2801904581065,93.3633106199299,91.0644143191091,115.567565501215,72.6515652695671,81.8169812761598,115.520465894062,67.1144165185189,150.03408906619,65.0101760400335,211.264663060133,162.84418203434,206.884038272412,109.426635792623,135.240583360257,70.2615311995205,60.5881457213847,48.9588519971543,81.9145225744224,65.3942509052777,200.319975605339,111.605719725792,108.332069154316,93.5022332476185,91.0268753523088,34.2542774307041,85.8681626521359,241.817228908586,93.7516936913511,105.542086777462,323.498201578986,141.388070115138,162.571180768792,82.0775336422311,456.202426048143,103.185788465709,163.072218161698,142.309143300995,94.2396511253673,199.870400586854,95.4122370215753,139.0396856946,80.9762974754214,85.6422818655221,76.290022373475,236.872937303674,342.589451111039,250.86272265529,107.289191940908,188.483675604094,230.665690935925,159.578522976412,35.3782516006087,296.990080907833,123.057500928474,108.281922250438,134.396524845263,103.342415017876,89.1740810568883,135.551292488112,103.710615387985,99.8909306457717,132.404344613281,142.456783681001,109.268192572775,93.7457427373303,75.7305578538607,82.31480226628,55.8633103265059,20.2808055714929,116.956438784637,79.7566374019896,325.799767368012,40.3402078421412,107.401449246877,49.826629575516,284.376435741777,96.9099294048121,102.217643455017,127.716855681647,103.993478527958,103.918566258197,72.9202247293233,58.9391645063825,182.046090626714,156.026117738318,110.918170752771,116.950250897973,138.216272097274,32.0082107913617,46.0988402324298,32.4015933789428,117.167292483471,72.4002972537085,94.280439666187,89.3794056574426,92.1309585089259,88.5613988871638,41.8763752211552,46.3134762909569,32.1358579088197,35.3093885871556,21.9661834161901,69.7841858270938,111.540620263017,119.561796154248,114.618538835213,78.3545494399325,68.7785602462571,73.171566753428,130.520582178,63.6501700496589,152.323619650113,141.42325703900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| |||
|short_description=p1@RCC1,p1@SNHG3 | |||
}} |
Latest revision as of 10:26, 17 September 2015
Short description: | p1@RCC1, p1@SNHG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RCC1_5end, CAGE_peak_1_at_SNHG3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373833, ENST00000434290, ENST00000447507_5end |
EntrezGene: | RCC1 |
HGNC: | 10118&submit=Submit 1913, 10118 |
UniProt: | P18754C9J3R0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.00e-15 | 53 |
common lymphoid progenitor | 9.00e-15 | 53 |
lymphoid lineage restricted progenitor cell | 2.90e-14 | 52 |
lymphocyte of B lineage | 2.01e-10 | 24 |
pro-B cell | 2.01e-10 | 24 |
epithelial cell | 5.62e-09 | 253 |
stem cell | 3.99e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.91e-22 | 235 |
disease of cellular proliferation | 1.10e-20 | 239 |
hematologic cancer | 4.73e-20 | 51 |
immune system cancer | 4.73e-20 | 51 |
leukemia | 5.98e-15 | 39 |
organ system cancer | 3.63e-14 | 137 |
myeloid leukemia | 1.44e-11 | 31 |
cell type cancer | 4.48e-08 | 143 |
carcinoma | 4.54e-08 | 106 |