FFCP PHASE1:Hg19::chr5:1883024..1883046,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50805 | |EntrezGene=50805 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6129 | |HGNC=6129 | ||
|TSSclassifier=strong | |||
|UniProt=P78413 | |UniProt=P78413 | ||
|association_with_transcript=-144bp_to_ENST00000231357,NM_016358,uc003jcz.2,uc011cmf.1_5end | |association_with_transcript=-144bp_to_ENST00000231357,NM_016358,uc003jcz.2,uc011cmf.1_5end | ||
|cluster_id=chr5:1883024..1883046,- | |||
|coexpression_cluster_id=C21 | |coexpression_cluster_id=C21 | ||
|description=CAGE_peak_5_at_IRX4_5end | |description=CAGE_peak_5_at_IRX4_5end | ||
|id=chr5:1883024..1883046,- | |id=chr5:1883024..1883046,- | ||
|ontology_enrichment_celltype=CL:0000039!3.91e-14!7;CL:0000586!3.91e-14!7;CL:0002327!5.85e-12!4;CL:0000076!3.09e-08!62;CL:0000066!8.32e-07!254 | |ontology_enrichment_celltype=CL:0000039!3.91e-14!7;CL:0000586!3.91e-14!7;CL:0002327!5.85e-12!4;CL:0000076!3.09e-08!62;CL:0000066!8.32e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002379;4.83e-18;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002379,5.26e-18,1 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.57e-09;2!UBERON:0010056;1.57e-09;2 | |||
|ontology_enrichment_disease=DOID:1749!2.06e-15!14;DOID:0050687!1.24e-07!143;DOID:305!1.53e-07!106;DOID:5093!1.62e-07!4;DOID:1612!1.62e-07!4;DOID:1287!2.29e-07!4;DOID:114!2.36e-07!2 | |ontology_enrichment_disease=DOID:1749!2.06e-15!14;DOID:0050687!1.24e-07!143;DOID:305!1.53e-07!106;DOID:5093!1.62e-07!4;DOID:1612!1.62e-07!4;DOID:1287!2.29e-07!4;DOID:114!2.36e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:3620;4.83e-18;1!DOID:3565;4.83e-18;1!DOID:178;1.03e-17;1!DOID:326;1.03e-17;1!DOID:3978;1.03e-17;1!DOID:3394;1.03e-17;1!DOID:5844;1.03e-17;1!DOID:5093;2.38e-17;4!DOID:1612;2.38e-17;4!DOID:114;1.57e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,5.26e-18,1;DOID:3565,5.26e-18,1;DOID:178,1.44e-17,1;DOID:326,1.44e-17,1;DOID:3978,1.44e-17,1;DOID:3394,1.44e-17,1;DOID:5844,1.44e-17,1;DOID:5093,2.19e-17,4;DOID:1612,2.19e-17,4;DOID:114,1.86e-09,2;DOID:7,4.81e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001911!5.85e-12!4;UBERON:0005333!5.85e-12!4;UBERON:0008425!5.85e-12!4;UBERON:0005311!5.85e-12!4 | |ontology_enrichment_uberon=UBERON:0001911!5.85e-12!4;UBERON:0005333!5.85e-12!4;UBERON:0008425!5.85e-12!4;UBERON:0005311!5.85e-12!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;7.83e-16;10!UBERON:0000178;9.13e-11;15!UBERON:0000179;9.13e-11;15!UBERON:0000463;9.13e-11;15!UBERON:0000310;1.67e-07;10!UBERON:0000478;6.22e-07;24!UBERON:0001443;6.74e-07;11!UBERON:0001723;9.11e-07;3!UBERON:0001033;9.11e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,7.83e-16,10;UBERON:0000358,7.83e-16,10;UBERON:0000307,7.83e-16,10;UBERON:0000091,7.83e-16,10;UBERON:0000087,7.83e-16,10;UBERON:0007010,7.83e-16,10;UBERON:0007806,7.83e-16,10;UBERON:0008780,7.83e-16,10;UBERON:0005728,7.83e-16,10;UBERON:0000178,9.14e-11,15;UBERON:0000179,9.14e-11,15;UBERON:0000463,9.14e-11,15;UBERON:0000310,1.62e-07,10;UBERON:0000478,6.22e-07,24;UBERON:0001443,6.54e-07,11;UBERON:0001723,7.70e-07,3;UBERON:0001033,7.70e-07,3;UBERON:0010056,7.70e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0.325808305310325,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0.268675568108545,0.581267877027924,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30213880542617,0.262379999988587,0,0.341380344856499,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.179515288819544,3.69401064534827,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,10.3782395038218,9.51442329888072,8.35375596043643,0,0,0,0,0,0,0,0,0,0,1.05226393590145,0.103688191397247,0,0,0,0,0,0,0,0,0.783532859223623,0,0,0,0,0,0.0969890164884194,0.0882561266915003,0,0,0,0,0,0,0,0.19980960958213,0.432271251462318,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,1.19807400299395,0.858452096273142,0.446342914883745,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0.285465333544967,3.2937214757744,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56596575179127,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,1.96393632455575,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0.534434810531121,0.275684698604535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0.325808305310325,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0.268675568108545,0.581267877027924,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30213880542617,0.262379999988587,0,0.341380344856499,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.179515288819544,3.69401064534827,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,10.3782395038218,9.51442329888072,8.35375596043643,0,0,0,0,0,0,0,0,0,0,1.05226393590145,0.103688191397247,0,0,0,0,0,0,0,0,0.783532859223623,0,0,0,0,0,0.0969890164884194,0.0882561266915003,0,0,0,0,0,0,0,0.19980960958213,0.432271251462318,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,1.19807400299395,0.858452096273142,0.446342914883745,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0.285465333544967,3.2937214757744,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56596575179127,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,1.96393632455575,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0.534434810531121,0.275684698604535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@IRX4 | |short_description=p5@IRX4 | ||
}} | }} |
Latest revision as of 12:21, 17 September 2015
Short description: | p5@IRX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_IRX4_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -144bp_to_ENST00000231357, NM_016358, uc003jcz.2, uc011cmf.1_5end |
EntrezGene: | IRX4 |
HGNC: | 6129 |
UniProt: | P78413 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meningothelial cell | 5.26e-18 | 1 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 7.83e-16 | 10 |
blastocyst | 7.83e-16 | 10 |
blastula | 7.83e-16 | 10 |
bilaminar disc | 7.83e-16 | 10 |
inner cell mass | 7.83e-16 | 10 |
cleaving embryo | 7.83e-16 | 10 |
connecting stalk | 7.83e-16 | 10 |
inner cell mass derived epiblast | 7.83e-16 | 10 |
extraembryonic mesoderm | 7.83e-16 | 10 |
blood | 9.14e-11 | 15 |
haemolymphatic fluid | 9.14e-11 | 15 |
organism substance | 9.14e-11 | 15 |
breast | 1.62e-07 | 10 |
extraembryonic structure | 6.22e-07 | 24 |
chest | 6.54e-07 | 11 |
tongue | 7.70e-07 | 3 |
gustatory system | 7.70e-07 | 3 |
future tongue | 7.70e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 5.26e-18 | 1 |
meningioma | 5.26e-18 | 1 |
vascular disease | 1.44e-17 | 1 |
ischemia | 1.44e-17 | 1 |
extrinsic cardiomyopathy | 1.44e-17 | 1 |
myocardial ischemia | 1.44e-17 | 1 |
myocardial infarction | 1.44e-17 | 1 |
thoracic cancer | 2.19e-17 | 4 |
breast cancer | 2.19e-17 | 4 |
heart disease | 1.86e-09 | 2 |
disease of anatomical entity | 4.81e-07 | 39 |