FFCP PHASE1:Hg19::chr11:27721994..27722008,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:27721994..27722008,- to FFCP PHASE1:Hg19::chr11:27721994..27722008,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=627 | |EntrezGene=627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |HGNC=1033 | ||
|TSSclassifier=strong | |||
|UniProt=P23560 | |UniProt=P23560 | ||
|association_with_transcript=26bp_to_ENST00000356660,ENST00000418212,ENST00000533246,NM_001143813,NM_001143814,NM_001709,uc001mru.2,uc009yjd.2,uc010rdw.1_5end | |||
|cluster_id=chr11:27721994..27722008,- | |||
|coexpression_cluster_id=C1629 | |||
|description=CAGE_peak_1_at_BDNF_5end | |||
|id=chr11:27721994..27722008,- | |||
|ontology_enrichment_celltype=CL:0000055!7.61e-44!180;CL:0000057!4.47e-20!75;CL:0000192!1.27e-18!42;CL:0000514!1.27e-18!42;CL:0000680!7.25e-18!57;CL:0000056!7.25e-18!57;CL:0000355!7.25e-18!57;CL:0000187!8.24e-18!54;CL:0000393!1.69e-17!60;CL:0000211!1.69e-17!60;CL:0000222!3.82e-17!119;CL:0000183!1.37e-16!59;CL:0000359!1.76e-15!32;CL:0000220!7.17e-14!246;CL:0002321!1.34e-13!248;CL:0000548!4.31e-09!679;CL:0000004!4.31e-09!679;CL:0000255!4.31e-09!679;CL:0000012!1.08e-08!682;CL:0000077!4.52e-08!19;CL:0002620!5.39e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.90e-17;32!CL:0000192;6.45e-15;43!CL:0000187;1.75e-10;55!CL:0000057;5.52e-09;73!CL:0000393;8.62e-09;61!CL:0000211;8.62e-09;61!CL:0000077;3.22e-08;19!CL:0002620;6.39e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.72e-22,76;CL:0000192,1.10e-20,43;CL:0000514,1.10e-20,43;CL:0000187,1.49e-19,55;CL:0000680,3.59e-19,58;CL:0000056,3.59e-19,58;CL:0000355,3.59e-19,58;CL:0000393,2.19e-18,61;CL:0000211,2.19e-18,61;CL:0000359,8.20e-18,32;CL:0000222,1.11e-16,121;CL:0002321,6.91e-11,250;CL:0000077,3.27e-08,19;CL:0002620,6.06e-08,23 | |||
|ontology_enrichment_development_v019=CL:0000514;6.45e-15;43!CL:0000355;4.84e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.82e-19!83;UBERON:0002329!3.82e-19!83;UBERON:0003077!3.82e-19!83;UBERON:0003059!3.82e-19!83;UBERON:0007282!3.82e-19!83;UBERON:0009618!3.82e-19!83;UBERON:0007285!3.82e-19!83;UBERON:0005256!3.56e-18!143;UBERON:0004290!2.28e-17!70;UBERON:0001134!3.50e-17!61;UBERON:0002036!3.50e-17!61;UBERON:0003082!3.50e-17!61;UBERON:0002385!4.85e-17!63;UBERON:0001015!4.85e-17!63;UBERON:0000383!4.85e-17!63;UBERON:0000486!5.35e-15!82;UBERON:0002100!2.31e-13!216;UBERON:0000490!5.61e-13!138;UBERON:0000475!1.04e-12!365;UBERON:0001637!1.08e-12!42;UBERON:0003509!1.08e-12!42;UBERON:0004572!1.08e-12!42;UBERON:0000481!4.82e-12!347;UBERON:0002049!3.17e-11!79;UBERON:0007798!3.17e-11!79;UBERON:0003914!4.96e-11!118;UBERON:0004872!1.48e-10!84;UBERON:0004573!1.57e-10!33;UBERON:0004571!1.57e-10!33;UBERON:0003104!3.22e-10!238;UBERON:0009142!3.22e-10!238;UBERON:0000483!6.20e-10!309;UBERON:0001981!6.31e-10!60;UBERON:0007500!6.31e-10!60;UBERON:0004537!6.31e-10!60;UBERON:0006965!6.31e-10!60;UBERON:0000119!6.49e-10!312;UBERON:0001009!1.41e-08!113;UBERON:0004535!1.42e-08!110;UBERON:0000468!9.95e-08!659;UBERON:0000055!1.09e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.08e-10;33!UBERON:0004571;1.08e-10;33!UBERON:0001637;6.91e-10;42!UBERON:0003509;6.91e-10;42!UBERON:0004572;6.91e-10;42!UBERON:0001135;4.25e-07;15!UBERON:0002384;4.76e-07;198 | |||
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| ||
|short_description=p1@BDNF | |||
}} | }} |
Latest revision as of 12:28, 17 September 2015
Short description: | p1@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BDNF_5end |
Coexpression cluster: | C1629_hepatic_spindle_Fibroblast_Smooth_liposarcoma_papillary_Ciliary |
Association with transcript: | 26bp_to_ENST00000356660, ENST00000418212, ENST00000533246, NM_001143813, NM_001143814, NM_001709, uc001mru.2, uc009yjd.2, uc010rdw.1_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.72e-22 | 76 |
smooth muscle cell | 1.10e-20 | 43 |
smooth muscle myoblast | 1.10e-20 | 43 |
muscle cell | 1.49e-19 | 55 |
muscle precursor cell | 3.59e-19 | 58 |
myoblast | 3.59e-19 | 58 |
multi-potent skeletal muscle stem cell | 3.59e-19 | 58 |
electrically responsive cell | 2.19e-18 | 61 |
electrically active cell | 2.19e-18 | 61 |
vascular associated smooth muscle cell | 8.20e-18 | 32 |
mesodermal cell | 1.11e-16 | 121 |
embryonic cell | 6.91e-11 | 250 |
mesothelial cell | 3.27e-08 | 19 |
skin fibroblast | 6.06e-08 | 23 |