FFCP PHASE1:Hg19::chr2:51255204..51255216,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9378 | |EntrezGene=9378 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8008 | |HGNC=8008 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-285bp_to_ENST00000496792_5end | |association_with_transcript=-285bp_to_ENST00000496792_5end | ||
|cluster_id=chr2:51255204..51255216,- | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_36_at_NRXN1_5end | |description=CAGE_peak_36_at_NRXN1_5end | ||
|id=chr2:51255204..51255216,- | |id=chr2:51255204..51255216,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;3.11e-21;2!CL:0000242;3.11e-21;2!CL:0000312;2.53e-09;5!CL:0000240;5.54e-08;6!CL:0000311;5.54e-08;6!CL:0000079;5.54e-08;6!CL:0000237;5.54e-08;6!CL:0002543;6.78e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.11e-21,2;CL:0000312,2.53e-09,5;CL:0000240,5.54e-08,6;CL:0000311,5.54e-08,6;CL:0000079,5.54e-08,6;CL:0000237,5.54e-08,6;CL:0000036,5.54e-08,6;CL:0000357,5.54e-08,6;CL:0000114,5.54e-08,6;CL:0002543,6.34e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0007123;3.22e-09;5!CL:0000357;5.54e-08;6!CL:0000114;5.54e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;2.80e-11;4!DOID:1325;5.38e-07;7!DOID:3904;5.38e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.80e-11,4;DOID:1325,5.38e-07,7;DOID:3904,5.38e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.45e-18!57;UBERON:0005068!2.45e-18!57;UBERON:0006241!2.45e-18!57;UBERON:0007135!2.45e-18!57;UBERON:0002020!8.67e-18!34;UBERON:0003528!8.67e-18!34;UBERON:0002616!1.17e-17!59;UBERON:0002619!8.88e-17!22;UBERON:0000349!1.74e-15!5;UBERON:0001869!6.25e-15!32;UBERON:0000956!9.26e-15!25;UBERON:0000203!9.26e-15!25;UBERON:0000955!1.30e-14!69;UBERON:0006238!1.30e-14!69;UBERON:0002791!1.84e-14!33;UBERON:0001017!2.69e-14!82;UBERON:0001893!5.08e-14!34;UBERON:0003075!1.00e-13!86;UBERON:0007284!1.00e-13!86;UBERON:0001950!1.13e-13!20;UBERON:0005743!1.52e-13!86;UBERON:0002346!5.02e-13!90;UBERON:0000988!4.22e-12!3;UBERON:0000073!4.41e-12!94;UBERON:0001016!4.41e-12!94;UBERON:0002780!1.63e-11!41;UBERON:0001890!1.63e-11!41;UBERON:0006240!1.63e-11!41;UBERON:0003080!3.19e-11!42;UBERON:0004733!3.58e-11!12;UBERON:0002028!3.58e-11!12;UBERON:0007277!3.58e-11!12;UBERON:0004732!2.51e-10!13;UBERON:0001871!5.59e-10!7;UBERON:0002298!7.15e-10!8;UBERON:0007023!7.74e-10!115;UBERON:0001882!1.15e-09!1;UBERON:0005403!1.15e-09!1;UBERON:0001282!1.76e-09!1;UBERON:0009842!1.76e-09!1;UBERON:0003704!1.76e-09!1;UBERON:0001171!1.76e-09!1;UBERON:0001172!1.76e-09!1;UBERON:0002022!2.67e-09!1;UBERON:0003076!5.68e-09!15;UBERON:0003057!5.68e-09!15;UBERON:0002680!8.08e-09!9;UBERON:0001895!8.08e-09!9;UBERON:0010092!8.08e-09!9;UBERON:0000025!5.17e-08!194;UBERON:0003056!1.81e-07!61;UBERON:0000033!1.96e-07!123;UBERON:0000483!2.38e-07!309;UBERON:0000119!3.02e-07!312;UBERON:0000153!5.29e-07!129;UBERON:0007811!5.29e-07!129;UBERON:0004121!5.77e-07!169;UBERON:0000924!9.43e-07!173;UBERON:0006601!9.43e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002046;3.22e-09;5!UBERON:0001871;6.04e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002046,3.22e-09,5;UBERON:0004117,3.22e-09,5;UBERON:0007689,3.22e-09,5;UBERON:0007123,3.22e-09,5;UBERON:0003091,3.22e-09,5;UBERON:0001871,6.39e-07,6 | |||
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|short_description=p36@NRXN1 | |short_description=p36@NRXN1 | ||
}} | }} |
Latest revision as of 13:50, 17 September 2015
Short description: | p36@NRXN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_NRXN1_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -285bp_to_ENST00000496792_5end |
EntrezGene: | NRXN1 |
HGNC: | 8008 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.11e-21 | 2 |
keratinocyte | 2.53e-09 | 5 |
stratified squamous epithelial cell | 5.54e-08 | 6 |
keratin accumulating cell | 5.54e-08 | 6 |
stratified epithelial cell | 5.54e-08 | 6 |
keratinizing barrier epithelial cell | 5.54e-08 | 6 |
epithelial fate stem cell | 5.54e-08 | 6 |
stratified epithelial stem cell | 5.54e-08 | 6 |
surface ectodermal cell | 5.54e-08 | 6 |
vein endothelial cell | 6.34e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
thyroid gland | 3.22e-09 | 5 |
pharyngeal pouch | 3.22e-09 | 5 |
thyroid diverticulum | 3.22e-09 | 5 |
pharyngeal pouch 2 | 3.22e-09 | 5 |
thyroid primordium | 3.22e-09 | 5 |
temporal lobe | 6.39e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.80e-11 | 4 |
bronchus cancer | 5.38e-07 | 7 |
bronchogenic carcinoma | 5.38e-07 | 7 |