FFCP PHASE1:Hg19::chr9:5510574..5510587,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80380 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18731 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BQ51 | |||
|association_with_transcript=4bp_to_ENST00000397747_5end | |||
|cluster_id=chr9:5510574..5510587,+ | |||
|coexpression_cluster_id=C2021 | |||
|description=CAGE_peak_3_at_PDCD1LG2_5end | |||
|id=chr9:5510574..5510587,+ | |||
|ontology_enrichment_celltype=CL:0000359!2.27e-13!32;CL:0002371!9.22e-13!591;CL:0000144!6.41e-12!625;CL:0000723!1.47e-11!436;CL:0000192!1.48e-11!42;CL:0000514!1.48e-11!42;CL:0000048!4.66e-11!430;CL:0000055!1.27e-10!180;CL:0000034!2.65e-10!444;CL:0000548!3.53e-09!679;CL:0000004!3.53e-09!679;CL:0000255!3.53e-09!679;CL:0000680!3.91e-09!57;CL:0000056!3.91e-09!57;CL:0000355!3.91e-09!57;CL:0000187!9.11e-09!54;CL:0000012!9.37e-09!682;CL:0000222!1.02e-08!119;CL:0002194!1.70e-08!63;CL:0000576!1.70e-08!63;CL:0000040!1.70e-08!63;CL:0000559!1.70e-08!63;CL:0002009!1.70e-08!65;CL:0000057!3.26e-08!75;CL:0002620!3.68e-08!23;CL:0000557!1.92e-07!71;CL:0000183!2.03e-07!59;CL:0000839!4.03e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.33e-17;32!CL:0000473;2.55e-13;39!CL:0000234;2.55e-13;39!CL:0000860;3.62e-12;33!CL:0002057;3.62e-12;33!CL:0000192;8.13e-09;43!CL:0002595;1.54e-08;5!CL:0002539;4.03e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,4.92e-18,32;CL:0002009,1.94e-14,61;CL:0002194,4.28e-14,59;CL:0000576,4.28e-14,59;CL:0000040,4.28e-14,59;CL:0000559,4.28e-14,59;CL:0000557,2.05e-12,67;CL:0000473,5.26e-12,48;CL:0000234,5.26e-12,48;CL:0000192,8.59e-12,43;CL:0000514,8.59e-12,43;CL:0000839,9.10e-12,66;CL:0000048,5.10e-11,427;CL:0000723,5.27e-11,433;CL:0000034,2.28e-10,441;CL:0000766,3.75e-10,72;CL:0000860,1.07e-09,42;CL:0002057,1.07e-09,42;CL:0000680,6.79e-09,58;CL:0000056,6.79e-09,58;CL:0000355,6.79e-09,58;CL:0002595,1.43e-08,5;CL:0002539,3.10e-08,10;CL:0000187,5.97e-08,55 | |||
|ontology_enrichment_development_v019=CL:0000514;8.13e-09;43!CL:0002057;6.79e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.21e-08;5!DOID:450;7.21e-08;5!DOID:66;7.21e-08;5!DOID:423;7.21e-08;5!DOID:0080000;7.21e-08;5!DOID:11722;7.21e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.62e-08,5;DOID:450,4.62e-08,5;DOID:66,4.62e-08,5;DOID:423,4.62e-08,5;DOID:0080000,4.62e-08,5;DOID:11722,4.62e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0004872!1.77e-13!84;UBERON:0003081!8.08e-13!216;UBERON:0002204!3.22e-12!167;UBERON:0001637!5.23e-12!42;UBERON:0003509!5.23e-12!42;UBERON:0004572!5.23e-12!42;UBERON:0001981!5.29e-12!60;UBERON:0007500!5.29e-12!60;UBERON:0004537!5.29e-12!60;UBERON:0006965!5.29e-12!60;UBERON:0000055!5.88e-12!69;UBERON:0004573!1.00e-10!33;UBERON:0004571!1.00e-10!33;UBERON:0000914!1.68e-10!83;UBERON:0002329!1.68e-10!83;UBERON:0003077!1.68e-10!83;UBERON:0003059!1.68e-10!83;UBERON:0007282!1.68e-10!83;UBERON:0009618!1.68e-10!83;UBERON:0007285!1.68e-10!83;UBERON:0002049!5.97e-10!79;UBERON:0007798!5.97e-10!79;UBERON:0000486!1.01e-09!82;UBERON:0004290!4.03e-09!70;UBERON:0004535!1.07e-07!110;UBERON:0001134!1.24e-07!61;UBERON:0002036!1.24e-07!61;UBERON:0003082!1.24e-07!61;UBERON:0002371!4.64e-07!80;UBERON:0001009!5.30e-07!113;UBERON:0002385!5.61e-07!63;UBERON:0001015!5.61e-07!63;UBERON:0000383!5.61e-07!63;UBERON:0002405!9.27e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.04e-11;33!UBERON:0004571;3.04e-11;33!UBERON:0001637;7.89e-09;42!UBERON:0003509;7.89e-09;42!UBERON:0004572;7.89e-09;42!UBERON:0003834;1.54e-08;5!UBERON:0001533;1.54e-08;5!UBERON:0004237;4.03e-08;10!UBERON:0004695;4.03e-08;10!UBERON:0002111;4.03e-08;10!UBERON:0004178;4.03e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,6.07e-16,167;UBERON:0003081,1.05e-13,203;UBERON:0004573,3.07e-12,33;UBERON:0004571,3.07e-12,33;UBERON:0001637,3.08e-12,42;UBERON:0003509,3.08e-12,42;UBERON:0004572,3.08e-12,42;UBERON:0002405,6.48e-12,93;UBERON:0002371,8.75e-12,76;UBERON:0004765,2.25e-11,90;UBERON:0001474,2.60e-10,82;UBERON:0000926,1.86e-09,315;UBERON:0004120,1.86e-09,315;UBERON:0006603,1.86e-09,315;UBERON:0000486,2.09e-09,83;UBERON:0001434,2.45e-09,100;UBERON:0002193,5.78e-09,108;UBERON:0002390,9.86e-09,98;UBERON:0003061,9.86e-09,98;UBERON:0003834,1.43e-08,5;UBERON:0001533,1.43e-08,5;UBERON:0000055,3.08e-08,68;UBERON:0004237,3.10e-08,10;UBERON:0004695,3.10e-08,10;UBERON:0002111,3.10e-08,10;UBERON:0004178,3.10e-08,10;UBERON:0007500,5.75e-08,59;UBERON:0001981,5.75e-08,59;UBERON:0004537,5.75e-08,59;UBERON:0006965,5.75e-08,59;UBERON:0004872,6.25e-08,83;UBERON:0001134,6.26e-08,62;UBERON:0002036,6.26e-08,62;UBERON:0003082,6.26e-08,62;UBERON:0002329,1.08e-07,71;UBERON:0003059,1.08e-07,71;UBERON:0007282,1.08e-07,71;UBERON:0004290,1.08e-07,71;UBERON:0009618,1.08e-07,71;UBERON:0002385,1.69e-07,64;UBERON:0001015,1.69e-07,64;UBERON:0000383,1.69e-07,64;UBERON:0003077,1.70e-07,72;UBERON:0007285,1.70e-07,72;UBERON:0007524,2.62e-07,73;UBERON:0002049,4.91e-07,78;UBERON:0007798,4.91e-07,78 | |||
|phase1_expression=0.363356758541113,1.07050261945492,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0,0,0.791300934685361,0,0,4.03395087871065,1.80808358407193,5.11217063271161,4.39139518911456,0.123121058076788,0,0,0,0.136874425072884,0.125542639594803,1.37544130346312,0.903106483949403,0.865818594450472,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0.217010870715852,0.895661896959697,2.26725566213286,0.77272670290256,0.290796477559129,0,0,0,0,0,7.19230980805376,5.37937483711111,6.85798466676897,1.72372840368309,1.93645405075148,1.35426486594342,0.188242339542605,0,0.224723484445085,2.44867113896722,3.53021929783703,1.91801137739712,4.28806690242731,4.3882004676759,2.13112375266347,1.16083695451434,1.70215567407342,1.24564449799115,5.52747063564835,5.21482918420201,3.9093992046921,0.605399502633369,0.368277635987565,1.58231193720442,0,0.212604299965044,0.209658645508376,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55974639639243,0,0,0,0.768547918354051,0.390178042679635,0,0,0,0,0,0,0,0.383220493601921,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.255725123687061,1.0843174571537,0.50133791063589,0.289693037921647,0,0,0,0,0.263504357079378,0.261958150995425,0,0.741568885568859,8.76277962867645,13.9303789839414,10.1048049994338,0,0,0,0.198762407366705,0.860234595106124,0,0,0.838998872419812,0,0.208994966536811,1.03366703667732,1.06729878806013,0,0.805658634218294,0.760272105718513,0.24406205754817,0.735326160691737,0,0.267899184852239,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0,1.49091585508596,1.39293562831038,2.25095607382472,0.860509862246441,0.354668382198357,0,0,0.74000264525148,0.311211035399766,0.808264032418128,0.163461903113459,0,0,0,1.24864030732128,0.570471821544449,0.896692083310806,0.23486899728753,0.161872944368132,0.140450806702248,0,0.245668634623536,0,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0,0.554128230968366,0.877955241761676,0.612975591598039,0.600952235626387,0.907457465280168,2.87023417102179,1.2813443329114,1.69545520927649,3.60109315301283,1.44273540933814,0,0.37223371266318,4.21940830603166,1.07180705677318,1.51460264546469,0.736399189138395,0.484938170456436,2.84007674013291,2.21654616100809,0.847802961552438,1.93260853163297,2.18196896472668,2.00763216772303,0,0,0,0,0,0,0,0.643240938192885,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,0,0.658501712451753,1.1240175325762,0.301586917234893,0.462942225792648,0.651616610620649,0,0,0,0.352226082707465,1.15493158208859,0.925971025153221,0.570762456703795,0,0,1.23108503043699,0.936017060556951,3.12125440806329,1.87467667973554,6.38332087155666,3.1190521393325,0.53735113621709,0.581267877027924,0,0,0.176096868026452,0.414656231081544,0,0,0,0,0,0,0.205654985406647,0.300343057843917,0,0,0,0.22001485746285,1.68053230485111,0,0.845302752556,1.86156681609409,0,0,0,0.266422179016099,0.428933980974443,0,0,0.325736184293735,0.355391948742546,0.791951872933429,0,0.871533458600294,0.399891964728228,1.2162378064119,1.00451418286425,0,1.4377491329495,0,0,1.30303176000821,0,1.07436577943937,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0.542530047399471,0.623912584592421,2.49800584316026,1.10391690523754,1.28855556491985,0.300946099727719,0,0,0,0.921845842708516,0.434418072340414,0,0,0,0,0,0.303127571446259,1.66435439510497,0,0.248107807818777,0.920771839728375,0.280660094433074,0.384417447767103,0.511707249066704,1.93024705372329,0,0.616838775210622,0.532685175939381,0.821271560138091,0.519254429183621,1.04589340613963,0,0.802025881213139,0.0920809889358963,0.459257792658427,1.45672934405374,0,0,0,0,0,0.105551628892876,0,0.340187410553031,0.431831832204279,0,0,0,0.254876273045038,0,0,0,0,0.256450125116389,0,0,0,0,0,3.44559322797703,0,0,0.096670718292122,0.154048617114644,0,0.137836572484531,0,0,0.255679882248303,0.0890320356467374,1.15699440752685,0.384380134730212,1.91419068741876,0.10115778085555,0.929691098594572,4.7221852024596,2.7881490806424,3.08033580176089,0.532306030317022,0,1.48259375283136,0.858749320451947,0,1.2655176988749,0.571890581771475,0.511795582622668,0,0.636406495851874,0,0,0.274537029736055,0.117812402345686,2.22400729730648,1.58510321173008,3.37006764991185,0,6.09283724078211,1.05650146756755,0.682499557039929,0,0,2.2054613741845,1.99031692572366,4.82295973779139,0,0.655894752046633,3.85529716229138,1.239293992399,0.281695602532241,0.573645408816206,2.45622602532803,2.1400263088875,0.354761064070598,0,0,0,0,0.577332676353072,0,0,0.376575203107117,0,1.68471475667626,0,1.83778720165568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.47748896947538,0,0,0,0.140669416410513,0.779160935160341,0.329607748453519,0,0,0.828851746593443,0,0.102268682502155,3.56945935837101,10.2643063928396,0.359473404589307,0,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.153900517007594,1.02547850262301,0,0.0897576444097721,0,2.87101043758728,2.47313502185028,3.73124343213044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.370691816839509,0.730953646538188,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0.138674673013139,0,0,1.74118413160805,0,0.171986032471617,0,0.0730893170861856,0,0.0969890164884194,0,0,0.411125773940253,0.19871461170299,0,0,0.961905843018405,0,0,0,0,0,0,0.248505071130865,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0.429765441419957,0,0.558564802544508,0.229160424011684,0,0,0,0,0.0671834724867263,0.720599767084807,0,0,0,0,0,0,0,0.136203406111576,0,0,0,1.1248694577575,0,0.0607495566580247,0,0,0,0.211200673038813,0,0.575745591958336,1.42939065274673,0,0,0.542999601753713,1.72844298240254,0.653174720218818,0,0,1.19271615249795,0,0,0,0,0.13223260174269,0,0,0.427149650270779,0,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0,0,0,0.122026264901963,0,0.573409195690071,0,0.0620964029413835,0,0.124980407962107,0,0,0.235265819698172,0,0,0.149254802886874,0,0.554805861502613,0.757612021100357,0,0,2.05956061557231,0.151230923763239,0.15543720058278,2.06997209985487,1.43367090447332,4.49803112163605,0.310525913752519,0.829412415681711,0.53168342911599,1.04349012362347,1.05180326298053,1.14241563650639,2.84809513243263,2.18218391043071,0.429642228169954,0.928067519756987,4.37905477568478,0.400027764663154,0,0.336749488765919,1.26184898228651,0,0.214441591374926,0.260994291965212,0.226705925512272,0.694567422971502,1.46842022703881,0.358177682162975,0,0.219284049578707,0.530067437837643,0.38582807654183,0,0,0,0.911579868532147,0,0.974301544196942,1.32864840313363,1.4720885483026,0,0.491545817507439,0,0.59996218756479,0,1.72214979660816,0,0.552317850755522,0,0.622077260032973,0,0,0,0,0,0,0,0,1.27201740261367,0,0,0.705351887381368,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,1.1441462864015,0,0,0,0.80682027481408,0,0,1.96526301012116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709618961301111,1.95897778844825,0.171488009437418,0.0679697329768317,0,0,0.111231401892069,0.156986185701028,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0.414432328326074,0,0,0,1.41998400876678,1.36341447614652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0.392616934229891,0,0,2.20905249094162,0.657887425858975,1.03132620757723,3.69782276922237,0,1.76447435857846,0.160482733378337,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0.213233981900981,0,0.322944549180031,0.682821857254437,0.672791175483681,0.12729431655633,0,0,0,0.202056159043763,0.0717222053926763,0,0.0814032686109745,0.426909383510862,1.9307228228694,0,0,0.122241444182866,0,0,0.603821380773079,0.961705476909699 | |||
|short_description=p3@PDCD1LG2 | |||
}} |
Latest revision as of 13:50, 17 September 2015
Short description: | p3@PDCD1LG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDCD1LG2_5end |
Coexpression cluster: | C2021_basal_mesenchymal_Dendritic_Smooth_Fibroblast_Aortic_Mallassezderived |
Association with transcript: | 4bp_to_ENST00000397747_5end |
EntrezGene: | PDCD1LG2 |
HGNC: | 18731 |
UniProt: | Q9BQ51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 4.92e-18 | 32 |
macrophage dendritic cell progenitor | 1.94e-14 | 61 |
monopoietic cell | 4.28e-14 | 59 |
monocyte | 4.28e-14 | 59 |
monoblast | 4.28e-14 | 59 |
promonocyte | 4.28e-14 | 59 |
granulocyte monocyte progenitor cell | 2.05e-12 | 67 |
defensive cell | 5.26e-12 | 48 |
phagocyte | 5.26e-12 | 48 |
smooth muscle cell | 8.59e-12 | 43 |
smooth muscle myoblast | 8.59e-12 | 43 |
myeloid lineage restricted progenitor cell | 9.10e-12 | 66 |
multi fate stem cell | 5.10e-11 | 427 |
somatic stem cell | 5.27e-11 | 433 |
stem cell | 2.28e-10 | 441 |
myeloid leukocyte | 3.75e-10 | 72 |
classical monocyte | 1.07e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.07e-09 | 42 |
muscle precursor cell | 6.79e-09 | 58 |
myoblast | 6.79e-09 | 58 |
multi-potent skeletal muscle stem cell | 6.79e-09 | 58 |
smooth muscle cell of the subclavian artery | 1.43e-08 | 5 |
aortic smooth muscle cell | 3.10e-08 | 10 |
muscle cell | 5.97e-08 | 55 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.62e-08 | 5 |
myotonic disease | 4.62e-08 | 5 |
muscle tissue disease | 4.62e-08 | 5 |
myopathy | 4.62e-08 | 5 |
muscular disease | 4.62e-08 | 5 |
myotonic dystrophy | 4.62e-08 | 5 |