FFCP PHASE1:Hg19::chr1:155990695..155990747,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:155990695..155990747,- to FFCP PHASE1:Hg19::chr1:155990695..155990747,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6746 | |EntrezGene=6746 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11324 | |HGNC=11324 | ||
|TSSclassifier=strong | |||
|UniProt=E9PJ35,E9PNP2,E9PQJ7,E9PN13,E9PLP2 | |UniProt=E9PJ35,E9PNP2,E9PQJ7,E9PN13,E9PLP2 | ||
|association_with_transcript=0bp_to_ENST00000368311,ENST00000466905,ENST00000472898,ENST00000473699,ENST00000474377,ENST00000480176,ENST00000484320,ENST00000496742,ENST00000529008,ENST00000531790,ENST00000532074_5end | |||
|cluster_id=chr1:155990695..155990747,- | |||
|description=CAGE_peak_1_at_SSR2_5end | |||
|id=chr1:155990695..155990747,- | |||
|ontology_enrichment_celltype=CL:0000003!4.20e-18!722;CL:0000055!2.03e-17!180;CL:0000012!5.11e-16!682;CL:0000144!8.80e-16!625;CL:0002371!2.23e-15!591;CL:0000548!4.64e-15!679;CL:0000004!4.64e-15!679;CL:0000255!4.64e-15!679;CL:0000183!1.15e-13!59;CL:0000048!1.24e-12!430;CL:0000723!2.90e-12!436;CL:0000680!5.71e-12!57;CL:0000056!5.71e-12!57;CL:0000355!5.71e-12!57;CL:0000034!9.90e-12!444;CL:0000187!1.36e-11!54;CL:0000192!5.86e-11!42;CL:0000514!5.86e-11!42;CL:0000393!2.01e-09!60;CL:0000211!2.01e-09!60;CL:0000359!1.27e-07!32;CL:0002320!1.56e-07!365;CL:0000791!1.98e-07!18;CL:0000789!1.98e-07!18;CL:0002420!1.98e-07!18;CL:0002419!1.98e-07!18;CL:0000790!1.98e-07!18;CL:0000057!2.16e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000192;4.17e-08;43!CL:0000791;2.00e-07;18!CL:0000789;2.00e-07;18!CL:0002419;2.00e-07;18!CL:0000359;3.42e-07;32!CL:0000187;7.99e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.50e-13,427;CL:0000723,3.65e-13,433;CL:0000034,1.32e-12,441;CL:0000680,3.59e-12,58;CL:0000056,3.59e-12,58;CL:0000355,3.59e-12,58;CL:0000187,8.57e-12,55;CL:0000192,3.74e-11,43;CL:0000514,3.74e-11,43;CL:0000393,1.28e-09,61;CL:0000211,1.28e-09,61;CL:0002320,4.22e-08,361;CL:0000359,1.27e-07,32;CL:0000057,1.78e-07,76;CL:0000791,1.98e-07,18;CL:0000789,1.98e-07,18;CL:0002420,1.98e-07,18;CL:0002419,1.98e-07,18;CL:0000790,1.98e-07,18;CL:0000219,9.01e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;4.17e-08;43!CL:0000790;2.00e-07;18!CL:0000355;6.14e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!6.08e-10!70;UBERON:0001134!6.47e-10!61;UBERON:0002036!6.47e-10!61;UBERON:0003082!6.47e-10!61;UBERON:0000486!9.12e-10!82;UBERON:0002385!5.10e-09!63;UBERON:0001015!5.10e-09!63;UBERON:0000383!5.10e-09!63;UBERON:0005256!1.08e-08!143;UBERON:0000914!1.18e-08!83;UBERON:0002329!1.18e-08!83;UBERON:0003077!1.18e-08!83;UBERON:0003059!1.18e-08!83;UBERON:0007282!1.18e-08!83;UBERON:0009618!1.18e-08!83;UBERON:0007285!1.18e-08!83;UBERON:0002384!1.80e-07!375;UBERON:0002100!8.21e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.11e-11,78;UBERON:0002329,3.89e-10,71;UBERON:0003059,3.89e-10,71;UBERON:0007282,3.89e-10,71;UBERON:0004290,3.89e-10,71;UBERON:0009618,3.89e-10,71;UBERON:0001134,4.13e-10,62;UBERON:0002036,4.13e-10,62;UBERON:0003082,4.13e-10,62;UBERON:0000486,5.90e-10,83;UBERON:0007524,7.03e-10,73;UBERON:0003077,1.69e-09,72;UBERON:0007285,1.69e-09,72;UBERON:0002385,3.29e-09,64;UBERON:0001015,3.29e-09,64;UBERON:0000383,3.29e-09,64;UBERON:0003104,4.26e-09,160;UBERON:0009142,4.26e-09,160;UBERON:0005256,3.54e-08,122;UBERON:0002384,4.97e-08,371;UBERON:0002100,9.52e-08,199 | |||
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| ||
|short_description=p1@SSR2 | |||
}} | }} |
Latest revision as of 14:25, 17 September 2015
Short description: | p1@SSR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SSR2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368311, ENST00000466905, ENST00000472898, ENST00000473699, ENST00000474377, ENST00000480176, ENST00000484320, ENST00000496742, ENST00000529008, ENST00000531790, ENST00000532074_5end |
EntrezGene: | SSR2 |
HGNC: | 11324 |
UniProt: | E9PJ35E9PNP2E9PQJ7E9PN13E9PLP2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.50e-13 | 427 |
somatic stem cell | 3.65e-13 | 433 |
stem cell | 1.32e-12 | 441 |
muscle precursor cell | 3.59e-12 | 58 |
myoblast | 3.59e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.59e-12 | 58 |
muscle cell | 8.57e-12 | 55 |
smooth muscle cell | 3.74e-11 | 43 |
smooth muscle myoblast | 3.74e-11 | 43 |
electrically responsive cell | 1.28e-09 | 61 |
electrically active cell | 1.28e-09 | 61 |
connective tissue cell | 4.22e-08 | 361 |
vascular associated smooth muscle cell | 1.27e-07 | 32 |
fibroblast | 1.78e-07 | 76 |
mature alpha-beta T cell | 1.98e-07 | 18 |
alpha-beta T cell | 1.98e-07 | 18 |
immature T cell | 1.98e-07 | 18 |
mature T cell | 1.98e-07 | 18 |
immature alpha-beta T cell | 1.98e-07 | 18 |
motile cell | 9.01e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.11e-11 | 78 |
somite | 3.89e-10 | 71 |
presomitic mesoderm | 3.89e-10 | 71 |
presumptive segmental plate | 3.89e-10 | 71 |
dermomyotome | 3.89e-10 | 71 |
trunk paraxial mesoderm | 3.89e-10 | 71 |
skeletal muscle tissue | 4.13e-10 | 62 |
striated muscle tissue | 4.13e-10 | 62 |
myotome | 4.13e-10 | 62 |
multilaminar epithelium | 5.90e-10 | 83 |
dense mesenchyme tissue | 7.03e-10 | 73 |
paraxial mesoderm | 1.69e-09 | 72 |
presumptive paraxial mesoderm | 1.69e-09 | 72 |
muscle tissue | 3.29e-09 | 64 |
musculature | 3.29e-09 | 64 |
musculature of body | 3.29e-09 | 64 |
mesenchyme | 4.26e-09 | 160 |
entire embryonic mesenchyme | 4.26e-09 | 160 |
trunk mesenchyme | 3.54e-08 | 122 |
connective tissue | 4.97e-08 | 371 |
trunk | 9.52e-08 | 199 |