FFCP PHASE1:Hg19::chr19:36630454..36630489,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:36630454..36630489,+ to FFCP PHASE1:Hg19::chr19:36630454..36630489,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=826 | |EntrezGene=826 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1481 | |HGNC=1481 | ||
|TSSclassifier=strong | |||
|UniProt=P04632 | |UniProt=P04632 | ||
|association_with_transcript=-428bp_to_ENST00000246533,NM_001003962,NM_001749,uc002odi.1,uc002odj.2,uc002odk.2_5end | |||
|cluster_id=chr19:36630454..36630489,+ | |||
|description=CAGE_peak_4_at_CAPNS1_5end | |||
|id=chr19:36630454..36630489,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.36e-21!65;CL:0002194!1.64e-21!63;CL:0000576!1.64e-21!63;CL:0000040!1.64e-21!63;CL:0000559!1.64e-21!63;CL:0000557!3.72e-21!71;CL:0000839!3.27e-20!70;CL:0000766!1.38e-19!76;CL:0002057!3.41e-19!42;CL:0000860!2.03e-18!45;CL:0000048!6.20e-14!430;CL:0000723!5.79e-13!436;CL:0002371!3.48e-12!591;CL:0000034!3.48e-11!444;CL:0002320!7.27e-11!365;CL:0000134!1.12e-09!358;CL:0000144!1.16e-09!625;CL:0000763!1.32e-09!112;CL:0000049!1.32e-09!112;CL:0000192!3.56e-09!42;CL:0000514!3.56e-09!42;CL:0000359!4.76e-09!32;CL:0000222!4.71e-08!119;CL:0002087!1.46e-07!119;CL:0002031!1.49e-07!124;CL:0000738!4.64e-07!140;CL:0000219!4.92e-07!390;CL:0000183!7.64e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.24e-13;39!CL:0000234;1.24e-13;39!CL:0000576;1.81e-13;48!CL:0000860;3.47e-13;33!CL:0002057;3.47e-13;33!CL:0000766;1.26e-10;69!CL:0000359;8.22e-09;32!CL:0000192;7.99e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.34e-23,61;CL:0002194,1.46e-23,59;CL:0000576,1.46e-23,59;CL:0000040,1.46e-23,59;CL:0000559,1.46e-23,59;CL:0000557,3.47e-23,67;CL:0000473,3.74e-22,48;CL:0000234,3.74e-22,48;CL:0000839,4.10e-22,66;CL:0000766,9.49e-22,72;CL:0000860,1.79e-19,42;CL:0002057,1.79e-19,42;CL:0000048,6.57e-14,427;CL:0000723,4.61e-13,433;CL:0000034,2.75e-11,441;CL:0002320,8.02e-11,361;CL:0000763,1.52e-10,108;CL:0000049,1.52e-10,108;CL:0000134,1.25e-09,354;CL:0000359,3.62e-09,32;CL:0000192,6.89e-09,43;CL:0000514,6.89e-09,43;CL:0000222,4.03e-08,121;CL:0002087,5.42e-08,115;CL:0002031,5.74e-08,120;CL:0000738,1.19e-07,136;CL:0000219,4.05e-07,386;CL:0002393,9.03e-07,9;CL:0002397,9.03e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.29e-14;42!CL:0000514;7.99e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.68e-24!216;UBERON:0002371!7.40e-20!80;UBERON:0002204!1.20e-19!167;UBERON:0002193!3.87e-18!112;UBERON:0001474!7.66e-17!86;UBERON:0002390!1.32e-16!102;UBERON:0003061!1.32e-16!102;UBERON:0004765!6.89e-15!101;UBERON:0001434!6.89e-15!101;UBERON:0002405!3.31e-14!115;UBERON:0000926!3.74e-11!448;UBERON:0004120!3.74e-11!448;UBERON:0006603!3.74e-11!448;UBERON:0002384!2.63e-10!375;UBERON:0001637!5.16e-09!42;UBERON:0003509!5.16e-09!42;UBERON:0004572!5.16e-09!42;UBERON:0004573!4.85e-07!33;UBERON:0004571!4.85e-07!33;UBERON:0002049!7.22e-07!79;UBERON:0007798!7.22e-07!79;UBERON:0000055!8.07e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.62e-25,203;UBERON:0002371,1.31e-21,76;UBERON:0002204,6.86e-21,167;UBERON:0002405,1.08e-19,93;UBERON:0002193,1.30e-19,108;UBERON:0000926,2.75e-19,315;UBERON:0004120,2.75e-19,315;UBERON:0006603,2.75e-19,315;UBERON:0001474,3.22e-18,82;UBERON:0002390,4.66e-18,98;UBERON:0003061,4.66e-18,98;UBERON:0004765,1.03e-17,90;UBERON:0001434,3.40e-16,100;UBERON:0002384,2.86e-10,371;UBERON:0001637,4.75e-09,42;UBERON:0003509,4.75e-09,42;UBERON:0004572,4.75e-09,42;UBERON:0002049,3.45e-07,78;UBERON:0007798,3.45e-07,78;UBERON:0000055,3.68e-07,68;UBERON:0004573,4.77e-07,33;UBERON:0004571,4.77e-07,33 | |||
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| ||
|short_description=p4@CAPNS1 | |||
}} | }} |
Latest revision as of 15:48, 17 September 2015
Short description: | p4@CAPNS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CAPNS1_5end |
Coexpression cluster: | NA |
Association with transcript: | -428bp_to_ENST00000246533, NM_001003962, NM_001749, uc002odi.1, uc002odj.2, uc002odk.2_5end |
EntrezGene: | CAPNS1 |
HGNC: | 1481 |
UniProt: | P04632 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.34e-23 | 61 |
monopoietic cell | 1.46e-23 | 59 |
monocyte | 1.46e-23 | 59 |
monoblast | 1.46e-23 | 59 |
promonocyte | 1.46e-23 | 59 |
granulocyte monocyte progenitor cell | 3.47e-23 | 67 |
defensive cell | 3.74e-22 | 48 |
phagocyte | 3.74e-22 | 48 |
myeloid lineage restricted progenitor cell | 4.10e-22 | 66 |
myeloid leukocyte | 9.49e-22 | 72 |
classical monocyte | 1.79e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.79e-19 | 42 |
multi fate stem cell | 6.57e-14 | 427 |
somatic stem cell | 4.61e-13 | 433 |
stem cell | 2.75e-11 | 441 |
connective tissue cell | 8.02e-11 | 361 |
myeloid cell | 1.52e-10 | 108 |
common myeloid progenitor | 1.52e-10 | 108 |
mesenchymal cell | 1.25e-09 | 354 |
vascular associated smooth muscle cell | 3.62e-09 | 32 |
smooth muscle cell | 6.89e-09 | 43 |
smooth muscle myoblast | 6.89e-09 | 43 |
mesodermal cell | 4.03e-08 | 121 |
nongranular leukocyte | 5.42e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 5.74e-08 | 120 |
leukocyte | 1.19e-07 | 136 |
motile cell | 4.05e-07 | 386 |
intermediate monocyte | 9.03e-07 | 9 |
CD14-positive, CD16-positive monocyte | 9.03e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.62e-25 | 203 |
bone marrow | 1.31e-21 | 76 |
musculoskeletal system | 6.86e-21 | 167 |
immune system | 1.08e-19 | 93 |
hemolymphoid system | 1.30e-19 | 108 |
mesoderm | 2.75e-19 | 315 |
mesoderm-derived structure | 2.75e-19 | 315 |
presumptive mesoderm | 2.75e-19 | 315 |
bone element | 3.22e-18 | 82 |
hematopoietic system | 4.66e-18 | 98 |
blood island | 4.66e-18 | 98 |
skeletal element | 1.03e-17 | 90 |
skeletal system | 3.40e-16 | 100 |
connective tissue | 2.86e-10 | 371 |
artery | 4.75e-09 | 42 |
arterial blood vessel | 4.75e-09 | 42 |
arterial system | 4.75e-09 | 42 |
vasculature | 3.45e-07 | 78 |
vascular system | 3.45e-07 | 78 |
vessel | 3.68e-07 | 68 |
systemic artery | 4.77e-07 | 33 |
systemic arterial system | 4.77e-07 | 33 |