FFCP PHASE1:Hg19::chr20:656893..656902,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85508 | |EntrezGene=85508 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15952 | |HGNC=15952 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ03 | |UniProt=Q9NQ03 | ||
|association_with_transcript=-68bp_to_ENST00000246104_5end | |association_with_transcript=-68bp_to_ENST00000246104_5end | ||
|cluster_id=chr20:656893..656902,- | |||
|coexpression_cluster_id=C10 | |coexpression_cluster_id=C10 | ||
|description=CAGE_peak_8_at_SCRT2_5end | |description=CAGE_peak_8_at_SCRT2_5end | ||
|id=chr20:656893..656902,- | |id=chr20:656893..656902,- | ||
|ontology_enrichment_celltype=CL:0000540!5.22e-13!6;CL:0000031!5.22e-13!6;CL:0000404!5.22e-13!6;CL:0000047!6.96e-10!8;CL:0002319!1.86e-07!25 | |ontology_enrichment_celltype=CL:0000540!5.22e-13!6;CL:0000031!5.22e-13!6;CL:0000404!5.22e-13!6;CL:0000047!6.96e-10!8;CL:0002319!1.86e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000540;2.05e-33;6!CL:0000404;2.05e-33;6!CL:0002319;2.12e-13;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.05e-33,6;CL:0000031,2.05e-33,6;CL:0000404,2.05e-33,6;CL:0000047,2.80e-25,8;CL:0002319,2.27e-13,25 | |||
|ontology_enrichment_development_v019=CL:0000031;2.05e-33;6!UBERON:0006238;6.35e-09;10!UBERON:0003056;1.30e-08;3 | |||
|ontology_enrichment_disease=DOID:2355!1.84e-09!1 | |ontology_enrichment_disease=DOID:2355!1.84e-09!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.63e-14!94;UBERON:0001016!8.63e-14!94;UBERON:0005743!3.31e-13!86;UBERON:0001017!7.84e-12!82;UBERON:0001950!1.36e-09!20;UBERON:0002619!9.66e-09!22;UBERON:0004121!7.61e-08!169;UBERON:0000956!1.04e-07!25;UBERON:0000203!1.04e-07!25;UBERON:0000924!1.32e-07!173;UBERON:0006601!1.32e-07!173;UBERON:0001872!1.77e-07!5;UBERON:0002021!1.95e-07!5;UBERON:0000966!3.04e-07!5;UBERON:0005388!3.04e-07!5;UBERON:0001802!3.04e-07!5;UBERON:0003056!3.08e-07!61 | |ontology_enrichment_uberon=UBERON:0000073!8.63e-14!94;UBERON:0001016!8.63e-14!94;UBERON:0005743!3.31e-13!86;UBERON:0001017!7.84e-12!82;UBERON:0001950!1.36e-09!20;UBERON:0002619!9.66e-09!22;UBERON:0004121!7.61e-08!169;UBERON:0000956!1.04e-07!25;UBERON:0000203!1.04e-07!25;UBERON:0000924!1.32e-07!173;UBERON:0006601!1.32e-07!173;UBERON:0001872!1.77e-07!5;UBERON:0002021!1.95e-07!5;UBERON:0000966!3.04e-07!5;UBERON:0005388!3.04e-07!5;UBERON:0001802!3.04e-07!5;UBERON:0003056!3.08e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;7.73e-11;49!UBERON:0001950;3.57e-10;20!UBERON:0002619;2.41e-09;22!UBERON:0002114;8.96e-09;2!UBERON:0000956;2.46e-08;25!UBERON:0000203;2.46e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.29e-17,81;UBERON:0001016,4.18e-15,89;UBERON:0001950,3.57e-10,20;UBERON:0002619,2.41e-09,22;UBERON:0002114,8.96e-09,2;UBERON:0000956,2.46e-08,25;UBERON:0000203,2.46e-08,25;UBERON:0000955,4.81e-08,68;UBERON:0006238,4.81e-08,68;UBERON:0004121,7.27e-08,171;UBERON:0000924,7.27e-08,171;UBERON:0006601,7.27e-08,171;UBERON:0011216,1.33e-07,223 | |||
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|short_description=p8@SCRT2 | |short_description=p8@SCRT2 | ||
}} | }} |
Latest revision as of 15:52, 17 September 2015
Short description: | p8@SCRT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SCRT2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -68bp_to_ENST00000246104_5end |
EntrezGene: | SCRT2 |
HGNC: | 15952 |
UniProt: | Q9NQ03 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.05e-33 | 6 |
neuroblast | 2.05e-33 | 6 |
electrically signaling cell | 2.05e-33 | 6 |
neuronal stem cell | 2.80e-25 | 8 |
neural cell | 2.27e-13 | 25 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.29e-17 | 81 |
nervous system | 4.18e-15 | 89 |
neocortex | 3.57e-10 | 20 |
regional part of cerebral cortex | 2.41e-09 | 22 |
duodenum | 8.96e-09 | 2 |
cerebral cortex | 2.46e-08 | 25 |
pallium | 2.46e-08 | 25 |
brain | 4.81e-08 | 68 |
future brain | 4.81e-08 | 68 |
ectoderm-derived structure | 7.27e-08 | 171 |
ectoderm | 7.27e-08 | 171 |
presumptive ectoderm | 7.27e-08 | 171 |
organ system subdivision | 1.33e-07 | 223 |