FFCP PHASE1:Hg19::chr1:156640649..156640659,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:156640649..156640659,- to FFCP PHASE1:Hg19::chr1:156640649..156640659,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10763 | |EntrezGene=10763 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7756 | |HGNC=7756 | ||
|TSSclassifier=strong | |||
|UniProt=Q2YDX4 | |UniProt=Q2YDX4 | ||
|association_with_transcript=87bp_to_BC108285_5end | |||
|cluster_id=chr1:156640649..156640659,- | |||
|coexpression_cluster_id=C3882 | |||
|description=CAGE_peak_2_at_NES_5end | |||
|id=chr1:156640649..156640659,- | |||
|ontology_enrichment_celltype=CL:0000055!6.01e-15!180;CL:0000071!1.20e-11!18;CL:0002546!1.20e-11!18;CL:0002139!1.73e-11!24;CL:0000057!4.81e-09!75;CL:1000413!1.98e-08!9;CL:0000115!3.20e-08!35;CL:0002620!5.74e-08!23;CL:0000133!1.75e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000071;1.28e-17;18!CL:0002139;1.07e-12;24!CL:0002605;3.25e-11;3!CL:0000115;1.25e-10;36!CL:1000413;7.98e-10;9!CL:0002543;3.61e-09;6!CL:0000128;2.39e-08;7!CL:0000126;2.39e-08;7!CL:0000127;2.39e-08;7!CL:0002545;4.49e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,1.31e-17,18;CL:0002546,1.31e-17,18;CL:0002139,1.08e-12,24;CL:0002605,1.29e-11,3;CL:0000115,2.22e-11,36;CL:1000413,5.38e-10,9;CL:0002543,5.76e-09,6;CL:0002078,1.36e-08,45;CL:0000128,1.39e-08,7;CL:0000126,1.39e-08,7;CL:0000127,1.39e-08,7;CL:0002453,1.39e-08,7;CL:0002545,2.30e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002546;1.28e-17;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!2.92e-12!241;UBERON:0001986!1.20e-11!18;UBERON:0004638!1.20e-11!18;UBERON:0004852!1.20e-11!18;UBERON:0000119!1.98e-11!312;UBERON:0000477!5.72e-11!286;UBERON:0000483!1.83e-10!309;UBERON:0000025!8.74e-10!194;UBERON:0000487!1.36e-09!22;UBERON:0000475!6.25e-09!365;UBERON:0006914!1.76e-08!25;UBERON:0002049!1.91e-08!79;UBERON:0007798!1.91e-08!79;UBERON:0003915!1.98e-08!9;UBERON:0004700!1.98e-08!9;UBERON:0001917!1.98e-08!9;UBERON:0004872!2.00e-08!84;UBERON:0000055!2.64e-08!69;UBERON:0003914!3.15e-08!118;UBERON:0001981!6.93e-08!60;UBERON:0007500!6.93e-08!60;UBERON:0004537!6.93e-08!60;UBERON:0006965!6.93e-08!60;UBERON:0000490!1.43e-07!138;UBERON:0000480!2.21e-07!626;UBERON:0000468!3.64e-07!659;UBERON:0000467!3.88e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.28e-17;18!UBERON:0001986;1.28e-17;18!UBERON:0004852;1.28e-17;18!UBERON:0000487;4.87e-14;22!UBERON:0006914;4.14e-12;25!UBERON:0003915;7.98e-10;9!UBERON:0004700;7.98e-10;9!UBERON:0001917;7.98e-10;9!UBERON:0005800;4.49e-08;2!UBERON:0001515;4.49e-08;2!UBERON:0000490;1.37e-07;33!UBERON:0001134;2.31e-07;16!UBERON:0002036;2.31e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.31e-17,18;UBERON:0001986,1.31e-17,18;UBERON:0004852,1.31e-17,18;UBERON:0000487,4.94e-14,22;UBERON:0006914,4.20e-12,25;UBERON:0003915,5.38e-10,9;UBERON:0004700,5.38e-10,9;UBERON:0001917,5.38e-10,9;UBERON:0007500,9.04e-10,59;UBERON:0001981,9.04e-10,59;UBERON:0004537,9.04e-10,59;UBERON:0006965,9.04e-10,59;UBERON:0005800,2.30e-08,2;UBERON:0001515,2.30e-08,2;UBERON:0000055,4.90e-08,68;UBERON:0004872,5.67e-08,83;UBERON:0003914,6.35e-07,117 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0,0,0.369363174230364,0.612002073732759,0,1.71741592278634,4.65373045247806,1.50651167513763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0,0,0,0.661743720148475,0.886917589850256,0.351339142772504,0.196468613246569,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0.694281003215189,0.56530794192401,2.93649605346934,4.67700671298115,1.25396979922086,0,0,0.33472061276467,3.22263453687318,0,0.732186172644509,1.83831540172934,2.43042584364528,1.07159673940896,0.898117490504679,1.12611480483322,1.53316637465883,0,1.09921046358244,0,0,0,0,0.379891534993739,0.132409180813219,0,0.354668382198357,0,1.06748995729705,0.49333509683432,0.311211035399766,0,0.326923806226917,0.151357427644931,0,0.234321431833797,0.312160076830321,0.570471821544449,0.448346041655403,0,0.161872944368132,0,0.408308342509787,2.33385202892359,0.103325781175765,0,0.989067717114227,0,0,0.168336113954066,1.37630371859161,0,0,0.919463387397059,0,0.794025282120147,2.33206526395521,0.213557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0.515281080091258,0.18611685633159,0.675105328965065,0.0974370051611986,1.00973509697646,0.184099797284599,0.323292113637624,2.13005755509969,0.403008392910561,0.67824236924195,0,0,0,0.609868530647977,0.662648841607426,1.39432731443422,1.14027160516907,0.504641701751257,1.82488679537915,0,1.28648187638577,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,1.4763109092493,0,1.2347220339942,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0.811512834825538,0,0.144366447761074,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.317489471460845,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0.285826432630578,0.784917590417525,0.87192013766656,0.51336800074665,0,0,0,0.531876233169741,0,0,0,0.266422179016099,0,0,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0,0,0,0,0,0,0,0.868687840005475,0.821905290201534,0,0,0,0,0,1.01637849688985,0,0.773288812777695,1.17261385734044,1.27587750330633,0,0,0,0,0,0.271265023699736,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0.368738337083406,2.17209036170207,0.195801157462741,4.46086450954113,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85051632563187,0.887808626565635,0.739144404124282,1.03850885836724,1.62694529843943,0.241718899183244,0.200506470303285,0,0.229628896329213,0.364182336013434,0.917870904715969,0,0.0770153371044148,0,1.46139224653261,0.316654886678627,0,1.36074964221213,0.431831832204279,0,0,0.501689773854853,0,0,0.447749509444357,0,0,0,0,0,0.206082023295445,0,0.165018999841176,0,0,0,1.06337790121334,0.154048617114644,0.614014698904518,0.964856007391714,0.107420244868274,1.16013355131383,1.19317278382541,5.69805028139119,0,0,0,0,0,0.94443704049192,0,0.308033580176089,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0.606547444719948,0,0.421258456238981,0.48763373908959,0.243713489631284,1.05650146756755,0.682499557039929,0.282810863907425,2.26016233240486,0,0,0,1.15755106853338,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,1.38871292465715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,2.45444838005172,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.230850775511391,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0.970722711091971,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.451961481561065,0,0,0.0633107959558787,0.195551382734803,0,0.426905989478705,0,0,0.114536596165916,0,0.14405479798815,0,0,0.271808412147228,0.313808538937,0,0,0,0.273810757783986,0,0,0,3.6306712165393,1.14580212005842,0,0.399358000997982,0,0,0.268733889946905,0,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0,0,0,0.272406812223151,0.321506296930038,0.412618309791701,0.415440338029185,0,0,0.0607495566580247,0,0.315222829196793,0.157363764404994,0.211200673038813,0.179287339332845,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0.146552233678082,0,0,0.13223260174269,0,0,0.427149650270779,0.314408610199332,0.828478110694391,0,0.395223263795889,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0.303298235083296,0.285465333544967,0,0,0,0.447764408660622,0.701139929541673,0,0,0,0,0,0.302461847526478,0.15543720058278,0.443565449968902,0.159296767163702,0,0,0,0.53168342911599,1.5652351854352,0,0,0,0.363697318405119,0,0,0.796191777397232,9.60066635191569,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607719912354764,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0.3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| ||
|short_description=p2@NES | |||
}} | }} |
Latest revision as of 16:59, 17 September 2015
Short description: | p2@NES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NES_5end |
Coexpression cluster: | C3882_Skeletal_skeletal_mesenchymal_Hepatic_Neural_astrocytoma_Pericytes |
Association with transcript: | 87bp_to_BC108285_5end |
EntrezGene: | NES |
HGNC: | 7756 |
UniProt: | Q2YDX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 1.31e-17 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.31e-17 | 18 |
endothelial cell of vascular tree | 1.08e-12 | 24 |
astrocyte of the cerebral cortex | 1.29e-11 | 3 |
endothelial cell | 2.22e-11 | 36 |
endothelial cell of artery | 5.38e-10 | 9 |
vein endothelial cell | 5.76e-09 | 6 |
meso-epithelial cell | 1.36e-08 | 45 |
oligodendrocyte | 1.39e-08 | 7 |
macroglial cell | 1.39e-08 | 7 |
astrocyte | 1.39e-08 | 7 |
oligodendrocyte precursor cell | 1.39e-08 | 7 |
thoracic aorta endothelial cell | 2.30e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.31e-17 | 18 |
endothelium | 1.31e-17 | 18 |
cardiovascular system endothelium | 1.31e-17 | 18 |
simple squamous epithelium | 4.94e-14 | 22 |
squamous epithelium | 4.20e-12 | 25 |
endothelial tube | 5.38e-10 | 9 |
arterial system endothelium | 5.38e-10 | 9 |
endothelium of artery | 5.38e-10 | 9 |
epithelial tube open at both ends | 9.04e-10 | 59 |
blood vessel | 9.04e-10 | 59 |
blood vasculature | 9.04e-10 | 59 |
vascular cord | 9.04e-10 | 59 |
segment of aorta | 2.30e-08 | 2 |
thoracic aorta | 2.30e-08 | 2 |
vessel | 4.90e-08 | 68 |
splanchnic layer of lateral plate mesoderm | 5.67e-08 | 83 |
epithelial tube | 6.35e-07 | 117 |