FFCP PHASE1:Hg19::chr5:34656529..34656549,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26064 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14873 | |||
|TSSclassifier=strong | |||
|UniProt=E9PED3,D6R9G6 | |||
|association_with_transcript=0bp_to_ENST00000512629,ENST00000513974_5end | |||
|cluster_id=chr5:34656529..34656549,+ | |||
|coexpression_cluster_id=C4495 | |||
|description=CAGE_peak_3_at_RAI14_5end | |||
|id=chr5:34656529..34656549,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.85e-28!119;CL:0000055!4.39e-25!180;CL:0000220!2.75e-20!246;CL:0002321!3.95e-20!248;CL:0002139!3.45e-17!24;CL:0000115!3.50e-14!35;CL:0000213!3.72e-14!57;CL:0000215!3.72e-14!57;CL:0000680!9.06e-14!57;CL:0000056!9.06e-14!57;CL:0000355!9.06e-14!57;CL:0000071!4.11e-13!18;CL:0002546!4.11e-13!18;CL:0000057!5.30e-13!75;CL:0000187!6.48e-13!54;CL:0002078!1.90e-12!44;CL:0000183!1.61e-11!59;CL:0000393!1.61e-11!60;CL:0000211!1.61e-11!60;CL:0000192!2.53e-11!42;CL:0000514!2.53e-11!42;CL:0000359!4.72e-11!32;CL:0000144!5.94e-08!625;CL:1000413!3.20e-07!9;CL:0002371!7.19e-07!591;CL:0000548!8.42e-07!679;CL:0000004!8.42e-07!679;CL:0000255!8.42e-07!679;CL:0002494!8.43e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.01e-18;24!CL:0000071;5.02e-14;18!CL:0000115;1.54e-13;36!CL:0000359;3.31e-11;32!CL:0000213;1.58e-09;58!CL:0000215;1.58e-09;58!CL:0002078;4.10e-09;45!CL:0000192;1.26e-08;43!CL:1000413;1.13e-07;9!CL:0000187;1.28e-07;55!CL:0002494;3.76e-07;16!CL:0000057;9.54e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.51e-30,121;CL:0002321,3.93e-19,250;CL:0002139,2.40e-18,24;CL:0000115,9.10e-16,36;CL:0000213,1.93e-15,58;CL:0000215,1.93e-15,58;CL:0000680,2.27e-14,58;CL:0000056,2.27e-14,58;CL:0000355,2.27e-14,58;CL:0000057,2.63e-14,76;CL:0000071,5.72e-14,18;CL:0002546,5.72e-14,18;CL:0002078,1.18e-13,45;CL:0000187,1.86e-13,55;CL:0000359,9.34e-12,32;CL:0000192,1.02e-11,43;CL:0000514,1.02e-11,43;CL:0000393,1.38e-11,61;CL:0000211,1.38e-11,61;CL:1000413,1.21e-07,9;CL:0002494,3.43e-07,16 | |||
|ontology_enrichment_development_v019=CL:0002546;5.02e-14;18!CL:0000222;4.06e-09;121!CL:0000514;1.26e-08;43!CL:0000355;7.85e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!3.92e-08!14;DOID:120!5.36e-07!27;DOID:193!5.83e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.23e-08;14!DOID:120;3.50e-07;27!DOID:193;4.30e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.27e-08,14;DOID:120,4.26e-07,27;DOID:193,4.54e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.58e-31!79;UBERON:0007798!1.58e-31!79;UBERON:0004872!9.16e-28!84;UBERON:0000055!5.99e-27!69;UBERON:0001981!1.73e-24!60;UBERON:0007500!1.73e-24!60;UBERON:0004537!1.73e-24!60;UBERON:0006965!1.73e-24!60;UBERON:0004535!5.87e-23!110;UBERON:0001009!8.72e-22!113;UBERON:0003914!1.18e-21!118;UBERON:0000490!2.62e-19!138;UBERON:0000914!5.64e-17!83;UBERON:0002329!5.64e-17!83;UBERON:0003077!5.64e-17!83;UBERON:0003059!5.64e-17!83;UBERON:0007282!5.64e-17!83;UBERON:0009618!5.64e-17!83;UBERON:0007285!5.64e-17!83;UBERON:0001637!5.46e-16!42;UBERON:0003509!5.46e-16!42;UBERON:0004572!5.46e-16!42;UBERON:0000468!1.09e-15!659;UBERON:0005256!1.16e-15!143;UBERON:0000467!1.81e-15!625;UBERON:0000480!3.80e-15!626;UBERON:0004290!1.95e-14!70;UBERON:0000486!9.13e-14!82;UBERON:0000119!2.77e-13!312;UBERON:0001986!4.11e-13!18;UBERON:0004638!4.11e-13!18;UBERON:0004852!4.11e-13!18;UBERON:0001134!4.62e-13!61;UBERON:0002036!4.62e-13!61;UBERON:0003082!4.62e-13!61;UBERON:0000477!4.69e-13!286;UBERON:0002385!8.31e-13!63;UBERON:0001015!8.31e-13!63;UBERON:0000383!8.31e-13!63;UBERON:0004573!1.02e-12!33;UBERON:0004571!1.02e-12!33;UBERON:0000487!1.26e-12!22;UBERON:0000483!1.71e-12!309;UBERON:0002100!1.63e-11!216;UBERON:0006914!3.91e-11!25;UBERON:0004111!4.62e-11!241;UBERON:0000947!4.97e-10!21;UBERON:0010191!4.97e-10!21;UBERON:0000926!7.67e-10!448;UBERON:0004120!7.67e-10!448;UBERON:0006603!7.67e-10!448;UBERON:0000475!3.54e-09!365;UBERON:0003104!5.82e-09!238;UBERON:0009142!5.82e-09!238;UBERON:0002050!1.01e-08!605;UBERON:0005423!1.01e-08!605;UBERON:0000922!1.47e-08!612;UBERON:0000923!1.56e-08!604;UBERON:0005291!1.56e-08!604;UBERON:0006598!1.56e-08!604;UBERON:0002532!1.56e-08!604;UBERON:0000481!1.83e-08!347;UBERON:0000025!1.04e-07!194;UBERON:0003915!3.20e-07!9;UBERON:0004700!3.20e-07!9;UBERON:0001917!3.20e-07!9;UBERON:0001638!9.14e-07!9;UBERON:0003920!9.14e-07!9;UBERON:0004582!9.14e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000055;8.56e-15;65!UBERON:0007500;9.47e-15;56!UBERON:0001981;9.47e-15;56!UBERON:0004537;9.47e-15;56!UBERON:0002049;2.89e-14;75!UBERON:0007798;2.89e-14;75!UBERON:0004638;5.02e-14;18!UBERON:0001986;5.02e-14;18!UBERON:0004852;5.02e-14;18!UBERON:0000487;1.93e-13;22!UBERON:0001637;4.79e-13;42!UBERON:0003509;4.79e-13;42!UBERON:0004572;4.79e-13;42!UBERON:0004573;6.90e-13;33!UBERON:0004571;6.90e-13;33!UBERON:0006914;1.13e-11;25!UBERON:0000947;8.98e-11;21!UBERON:0010191;8.98e-11;21!UBERON:0000490;5.68e-10;33!UBERON:0003914;6.21e-10;74!UBERON:0004535;2.88e-08;109!UBERON:0001009;7.82e-08;112!UBERON:0003915;1.13e-07;9!UBERON:0004700;1.13e-07;9!UBERON:0001917;1.13e-07;9!UBERON:0001638;3.23e-07;9!UBERON:0003920;3.23e-07;9!UBERON:0004582;3.23e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,4.19e-33,78;UBERON:0007798,4.19e-33,78;UBERON:0004872,5.40e-29,83;UBERON:0000055,1.93e-28,68;UBERON:0004535,1.13e-25,109;UBERON:0007500,1.48e-25,59;UBERON:0001981,1.48e-25,59;UBERON:0004537,1.48e-25,59;UBERON:0006965,1.48e-25,59;UBERON:0001009,2.90e-24,112;UBERON:0003914,6.90e-23,117;UBERON:0000490,2.30e-21,148;UBERON:0001637,4.65e-17,42;UBERON:0003509,4.65e-17,42;UBERON:0004572,4.65e-17,42;UBERON:0007503,3.83e-15,78;UBERON:0002329,6.49e-15,71;UBERON:0003059,6.49e-15,71;UBERON:0007282,6.49e-15,71;UBERON:0004290,6.49e-15,71;UBERON:0009618,6.49e-15,71;UBERON:0007524,1.89e-14,73;UBERON:0003077,2.54e-14,72;UBERON:0007285,2.54e-14,72;UBERON:0000486,2.63e-14,83;UBERON:0004638,5.72e-14,18;UBERON:0001986,5.72e-14,18;UBERON:0004852,5.72e-14,18;UBERON:0004573,1.52e-13,33;UBERON:0004571,1.52e-13,33;UBERON:0000487,1.92e-13,22;UBERON:0001134,1.98e-13,62;UBERON:0002036,1.98e-13,62;UBERON:0003082,1.98e-13,62;UBERON:0002385,6.28e-13,64;UBERON:0001015,6.28e-13,64;UBERON:0000383,6.28e-13,64;UBERON:0005256,7.39e-13,122;UBERON:0003104,1.92e-12,160;UBERON:0009142,1.92e-12,160;UBERON:0006914,7.70e-12,25;UBERON:0000926,8.57e-12,315;UBERON:0004120,8.57e-12,315;UBERON:0006603,8.57e-12,315;UBERON:0000119,1.23e-11,309;UBERON:0000483,7.17e-11,306;UBERON:0000947,1.17e-10,21;UBERON:0010191,1.17e-10,21;UBERON:0004111,8.04e-09,240;UBERON:0002100,1.06e-08,199;UBERON:0003915,1.21e-07,9;UBERON:0004700,1.21e-07,9;UBERON:0001917,1.21e-07,9;UBERON:0001638,3.74e-07,9;UBERON:0003920,3.74e-07,9;UBERON:0004582,3.74e-07,9;UBERON:0000948,9.25e-07,24;UBERON:0005498,9.25e-07,24;UBERON:0004140,9.25e-07,24;UBERON:0009881,9.25e-07,24;UBERON:0004141,9.25e-07,24;UBERON:0003084,9.25e-07,24;UBERON:0007005,9.25e-07,24;UBERON:0004139,9.25e-07,24;UBERON:0004291,9.25e-07,24 | |||
|phase1_expression=2.72517568905835,1.71280419112787,2.11431606143957,3.00219895059391,0.446961094427288,5.23403114460221,0,5.05375898741465,0,2.21160542851358,1.39560233594486,0.873765488520689,0.527533956456907,2.47532705920093,3.64537113300707,8.74022690387308,7.23233433628772,5.11217063271161,10.2465887746006,2.83178433576612,2.65200898617529,1.56727360739044,2.57612388417951,2.18999080116615,2.38531015230125,0,0,0,0,0,0,0,1.204823675113,1.10926203050036,0,0,0.293600439334847,0,0.200544447470142,0,0.223915474239924,0.32389366601898,0,4.21654892460738,1.88937971844405,3.63876091781724,0.464858073811369,0,0.929119112685311,0.28769239232215,0.256160706529101,0.47296445977717,1.03423704220986,0.645484683583826,0,2.44715041405386,2.18324920046277,2.24723484445085,2.14258724659632,0.641858054152187,0.639337125799041,0.329851300186716,0.199463657621632,0.852449501065388,0.290209238628584,0,0.622822248995575,0.75374599577023,0.521482918420201,0.217188844705117,0,0.368277635987565,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0.574752439954483,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0,0,0,4.87613732627923,8.04841031644363,11.3797680040742,2.53007406669196,4.01070328508712,2.02785126545153,2.3858578411533,2.43317435151318,7.27918092163323,10.8647404756656,12.3847047827308,1.76821751921912,0.364295288292542,0.370784442784429,0.649094787309367,0.348259474598534,0.930705723632056,0,0,0,24.8453009208381,17.2046919021225,16.3156035755569,16.9592382577203,20.1359729380755,23.6601516068458,14.8386426241136,34.6278457286901,49.8072767761394,71.2954905188748,31.8235160516226,34.9725168630516,15.3759096255347,43.3842434808125,22.6839745406893,34.2910956610866,26.494465969888,32.5447178596801,30.6633274931766,24.6809071487714,32.4267086756821,0,0,0.436094052142534,4.96971951695318,6.58478660655815,13.5057364429483,6.59724227722272,4.25602058638028,7.28880880184999,11.7423895302675,4.9333509683432,5.60179863719579,10.372721749366,12.2596427335094,3.78393569112329,5.18558332031999,0.937285727335186,4.99456122928513,8.55707732316674,6.12739590262384,2.11382097558777,3.88495066483516,3.37081936085396,5.10385428137233,3.31652656741774,2.27316718586684,11.8800285728205,5.93440630268536,2.73048408581408,1.43723628363248,2.86171393721913,3.87867411603089,8.31192346452549,9.65750765937843,6.43624371177941,8.71380741658261,9.07457465280168,4.48474089222155,3.84403299873421,4.87443372666992,6.90209520994125,5.25567899116038,4.89517026086695,2.41951913231067,4.89451363499672,5.55390929418832,6.05841058185875,2.94559675655358,5.01102776138317,6.39017266529906,5.33986120606493,3.73033303083073,3.86521706326594,5.45492241181669,8.03052867089211,0.975789649036763,1.59035721985782,0.580969714347592,0.932949495138334,0.756962552626885,0.72995471815166,4.69348596989448,3.85944562915731,1.38134921352481,2.3218396401599,2.16563844500876,0.473227200159376,0.337169380156203,0.723033089650446,0.661763836394364,0.435758888184812,0.474541238222193,0.269662616320329,0,0,7.38155454624648,7.01208869017229,2.4694440679884,7.3504355692771,0,0.982827216677626,1.18157981336281,0,0.245976877086227,21.2744084770172,1.42675371031213,0,1.10581869652794,1.66659201285353,0.651616610620649,1.03993478527958,8.6598805215164,5.91245065372892,20.429112797033,34.2148481193745,21.2973335785241,43.9487091661922,0,0,0.984868024349589,2.57404691653161,2.22946743433092,8.43604505880993,9.07103492273841,6.09632918142262,2.5971971583826,1.45316969256981,0,28.5744677979647,5.01876073875388,7.46381215946779,8.2148373447668,4.4184851699233,1.39695367442772,1.52795370223311,1.17217447210047,1.71072446022705,1.64523988325318,2.10240140490742,2.85826432630578,7.62491373548453,4.79556075716608,10.7073897298587,14.9955190279022,0,8.45302752556,15.6903488785074,3.12022310734098,1.28603687131071,0,3.19706614819319,8.721657613147,2.71310802695722,2.46972101034231,6.84045987016844,6.04166312862328,8.71147060226772,8.44030255766841,6.97226766880235,11.4968939859366,1.2162378064119,0,0,8.62649479769697,5.7430967917057,1.42636905040718,5.35690834670043,4.9314317412092,5.90901178691655,0,0,0,0.128343036279748,0.76228387266739,3.90419561572865,0.773288812777695,1.00509759200609,0.637938751653163,0,0,0,2.20844685094452,1.00034104211935,1.35632511849868,3.32753378449291,3.39015078714607,3.94256037584837,3.5142424497814,1.80567659836631,0,2.0694614258501,3.98535359121262,1.84369168541703,2.86715927744673,0.391602314925481,1.02943027143257,0,0.215714200818617,0,0.606255142892519,3.32870879020994,0.30239029332968,2.72918588600655,10.4354141835882,3.64858122762996,2.81906128362542,3.07024349440022,3.53878626515936,0,6.78522652731684,4.79416658345443,5.25613798488379,4.15403543346897,6.50778119375772,0.604297247958111,4.81215528727884,0.644566922551274,3.67406234126742,4.91646153618136,4.06485686374215,1.35359883872224,4.23584354074281,0,1.46139224653261,5.48868470242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| |||
|short_description=p3@RAI14 | |||
}} |
Latest revision as of 17:32, 17 September 2015
Short description: | p3@RAI14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAI14_5end |
Coexpression cluster: | C4495_Endothelial_Lymphatic_Mast_gall_Iris_osteosarcoma_Lens |
Association with transcript: | 0bp_to_ENST00000512629, ENST00000513974_5end |
EntrezGene: | RAI14 |
HGNC: | 14873 |
UniProt: | E9PED3D6R9G6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.51e-30 | 121 |
embryonic cell | 3.93e-19 | 250 |
endothelial cell of vascular tree | 2.40e-18 | 24 |
endothelial cell | 9.10e-16 | 36 |
lining cell | 1.93e-15 | 58 |
barrier cell | 1.93e-15 | 58 |
muscle precursor cell | 2.27e-14 | 58 |
myoblast | 2.27e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.27e-14 | 58 |
fibroblast | 2.63e-14 | 76 |
blood vessel endothelial cell | 5.72e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.72e-14 | 18 |
meso-epithelial cell | 1.18e-13 | 45 |
muscle cell | 1.86e-13 | 55 |
vascular associated smooth muscle cell | 9.34e-12 | 32 |
smooth muscle cell | 1.02e-11 | 43 |
smooth muscle myoblast | 1.02e-11 | 43 |
electrically responsive cell | 1.38e-11 | 61 |
electrically active cell | 1.38e-11 | 61 |
endothelial cell of artery | 1.21e-07 | 9 |
cardiocyte | 3.43e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.27e-08 | 14 |
female reproductive organ cancer | 4.26e-07 | 27 |
reproductive organ cancer | 4.54e-07 | 29 |