FFCP PHASE1:Hg19::chr5:34915319..34915336,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5810 | |EntrezGene=5810 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9806 | |HGNC=9806 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-413bp_to_ENST00000512192_5end | |association_with_transcript=-413bp_to_ENST00000512192_5end | ||
|cluster_id=chr5:34915319..34915336,- | |||
|description=CAGE_peak_4_at_RAD1_5end | |description=CAGE_peak_4_at_RAD1_5end | ||
|id=chr5:34915319..34915336,- | |id=chr5:34915319..34915336,- | ||
|ontology_enrichment_celltype=CL:0000548!3.12e-14!679;CL:0000004!3.12e-14!679;CL:0000255!3.12e-14!679;CL:0000012!3.83e-14!682;CL:0000063!1.39e-10!578;CL:0000003!1.63e-08!722;CL:0000057!3.98e-07!75 | |ontology_enrichment_celltype=CL:0000548!3.12e-14!679;CL:0000004!3.12e-14!679;CL:0000255!3.12e-14!679;CL:0000012!3.83e-14!682;CL:0000063!1.39e-10!578;CL:0000003!1.63e-08!722;CL:0000057!3.98e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0002504;3.34e-07;3!CL:1000279;3.34e-07;3!CL:1000280;3.34e-07;3 | |ontology_enrichment_celltype_v019=CL:0002504;3.34e-07;3!CL:1000279;3.34e-07;3!CL:1000280;3.34e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002504,3.95e-07,3;CL:1000279,3.95e-07,3;CL:1000280,3.95e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!4.06e-20!235;DOID:14566!4.93e-20!239;DOID:2531!1.70e-10!51;DOID:0060083!1.70e-10!51;DOID:305!1.78e-10!106;DOID:0050686!1.11e-09!137;DOID:0050687!1.51e-09!143;DOID:1240!5.61e-08!39 | |ontology_enrichment_disease=DOID:162!4.06e-20!235;DOID:14566!4.93e-20!239;DOID:2531!1.70e-10!51;DOID:0060083!1.70e-10!51;DOID:305!1.78e-10!106;DOID:0050686!1.11e-09!137;DOID:0050687!1.51e-09!143;DOID:1240!5.61e-08!39 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,1.94e-08,235;DOID:14566,5.33e-08,239;DOID:305,1.52e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.29e-07!9;UBERON:0008947!8.01e-07!38;UBERON:0003258!8.01e-07!38 | |ontology_enrichment_uberon=UBERON:0001737!2.29e-07!9;UBERON:0008947!8.01e-07!38;UBERON:0003258!8.01e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.15e-16;9!UBERON:0001557;1.15e-16;9!UBERON:0002367;3.07e-07;11!UBERON:0010147;3.07e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.15e-16;9!UBERON:0001557;1.15e-16;9!UBERON:0002367;3.07e-07;11!UBERON:0010147;3.07e-07;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,8.47e-17,9;UBERON:0001557,1.58e-08,19;UBERON:0002367,1.65e-07,11;UBERON:0010147,1.65e-07,11;UBERON:0009846,1.65e-07,11;UBERON:0003353,1.65e-07,11;UBERON:0004902,1.65e-07,11;UBERON:0003820,1.65e-07,11;UBERON:0009847,1.65e-07,11;UBERON:0004921,2.67e-07,118;UBERON:0001007,8.32e-07,145;UBERON:0001555,8.32e-07,145;UBERON:0007026,8.32e-07,145;UBERON:0003937,8.81e-07,12;UBERON:0005399,8.81e-07,12 | |||
|phase1_expression=0.726713517082227,0,0.422863212287913,2.00146596706261,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0.602694528023977,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.547497700291537,0.125542639594803,0.687720651731561,0.492603536699674,0.708397031823113,0,0,0.309632246632152,0,0.6024118375565,0.369754010166788,2.09161441566814,1.84820002233648,0.587200878669695,0.553995408531877,0.401088894940283,0,0,0,0,0,0,0,0,0,0,0,0.512321413058201,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0.398927315243264,0.426224750532694,0,0,0,1.25624332628372,0.521482918420201,0.65156653411535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0.790152254325231,0,0.393010762749165,0.411202997999018,0,0.651844533267181,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0.276350017785848,0,0.14828656316206,0,0,0.113309342697566,0,0,0.253019692019503,0.318565414324097,0,0.950452044448374,0,0.127986611154418,0,0.236777252044017,0,0.403213486449465,0.534880391567015,0.434473211648397,0,0.670700859703636,0,1.0843174571537,3.50936537445123,1.30361867064741,0,1.45990461090791,0,0.221729397462564,0.263504357079378,0.261958150995425,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0,0,0.417989933073621,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0.22452937262617,0.225222960966644,0,0.949265659568129,0.183201743930407,0,0,0,0,0,0.264818361626438,0.573673241497627,0,0,0,0,0,0.134710672069688,0.817309515567294,0,0,0.468642863667593,0.624320153660641,1.1409436430889,0.896692083310806,0.23486899728753,0.323745888736263,0.280901613404497,0.816616685019573,0.61417158655884,0,3.56400857184616,2.71993622206413,2.73048408581408,3.59309070908119,0.336672227908132,0.625592599359821,0.554128230968366,0.438977620880838,0.919463387397059,1.05166641234618,0.226864366320042,0.538168907066586,1.2813443329114,1.27159140695737,0.900273288253207,1.03052529238439,1.28820270022815,1.11670113798954,0.337552664482532,0.389748020644795,0.252433774244115,1.19664868234989,0.484938170456436,0.710019185033229,0.503760491138201,0.847802961552438,0,0.272746120590835,0,0,0.265059536642971,0.116193942869518,0.310983165046111,0.756962552626885,0.36497735907583,0,0.643240938192885,0,4.64367928031979,1.44375896333917,2.83936320095625,4.55178663210875,2.41011029883482,2.53676137284506,1.52515610864684,2.37270619111097,2.83145747136345,4.12065076763227,1.15424147083917,0.738155454624648,0,0,0,0,0,0,0.882926198829301,0.860919069801795,0.514703430895577,0.109750285408626,0,0.301586917234893,0.185176890317059,0.325808305310325,0,0,0.231860809950154,0.117408694235822,0.144366447761074,0,0.190254152234598,0.790204397959275,0,0,0,0.148631162288728,0,0,0.283550194484773,1.16426079513703,0.871901815541886,0,0.492663237895943,0.088048434013226,0.414656231081544,0,0.25248486685276,0.571481048629521,0,0,3.4214489204541,1.02827492703324,0.300343057843917,0.571652865261156,0.224262168690721,0,0.66004457238855,0.517086863031111,3.57656445851882,0.845302752556,0.531876233169741,2.08014873822732,0.257207374262142,2.83698264046557,0.266422179016099,1.57275793023962,0,0,0.65147236858747,0.710783897485092,2.37585561880029,0,0,0,0,0,0,0,0,0,0.723906533337896,0.821905290201534,0.179060963239896,0.672510863961164,1.57624608161542,0.862510299438069,0.898401253958239,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0.542530047399471,0.415941723061614,0.892144943985809,1.10391690523754,0.468565659970853,1.20378439891088,0,1.03473071292505,0,0,1.12948698808508,0.195801157462741,0,0,0,0.106727557803444,0.303127571446259,0,0.30239029332968,0.496215615637554,0.767309866440312,0.841980283299221,0.384417447767103,1.02341449813341,0.160853921143607,1.48418066444991,0.308419387605311,0.177561725313127,0.164254312027618,0,0.232420756919918,1.57117284469109,0,0.0920809889358963,2.06666006696292,2.00300284807389,1.44236856455367,0,0,0,0,0.105551628892876,0,0.510281115829547,0.431831832204279,0,0,0,0.254876273045038,0,0,0.877039506583738,1.0457418040996,0,0,0,0.103041011647722,0.54941678891006,0.495056999523528,0,0,0,0,0.462145851343933,0.307007349452259,0.689182862422653,0,0.145016693914229,0.255679882248303,0,0,0,0.638063562472921,0,0,0,0,0,0,0,0.18532421910392,0,0.372158369359667,0.316379424718726,0.38126038784765,0.255897791311334,0.42793898803392,0,0,5.03642881233281,2.19629623788844,3.18093486333353,0,0,0,1.46290121726877,0,0,2.8664981395677,1.97967604735198,0,0,0,0,1.73632660280006,0.655894752046633,1.01455188481352,0.6196469961995,0,0.286822704408103,0.589494246078727,0,1.41904425628239,0,0.658589785919804,0.75894634753143,0.349934720244983,0.384888450902048,0.670302275535787,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,1.22520107990516,0.743212700502875,1.15415370381156,0.355709216742071,0.318852545457645,0.798317485731266,0.383010740264733,0.635020748171649,0,0.842391534340376,0.228234679033192,1.09675927041116,5.01268954180134,0.677167111206413,0.321176150207399,0.40359941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| ||
|short_description=p4@RAD1 | |short_description=p4@RAD1 | ||
}} | }} |
Latest revision as of 17:49, 17 September 2015
Short description: | p4@RAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -413bp_to_ENST00000512192_5end |
EntrezGene: | RAD1 |
HGNC: | 9806 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 3.95e-07 | 3 |
smooth muscle cell of large intestine | 3.95e-07 | 3 |
smooth muscle cell of colon | 3.95e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 8.47e-17 | 9 |
upper respiratory tract | 1.58e-08 | 19 |
prostate gland | 1.65e-07 | 11 |
male accessory sex gland | 1.65e-07 | 11 |
embryonic cloacal epithelium | 1.65e-07 | 11 |
epithelium of hindgut | 1.65e-07 | 11 |
urogenital sinus epithelium | 1.65e-07 | 11 |
prostate bud | 1.65e-07 | 11 |
prostate field | 1.65e-07 | 11 |
subdivision of digestive tract | 2.67e-07 | 118 |
digestive system | 8.32e-07 | 145 |
digestive tract | 8.32e-07 | 145 |
primitive gut | 8.32e-07 | 145 |
sex gland | 8.81e-07 | 12 |
male reproductive gland | 8.81e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.94e-08 | 235 |
disease of cellular proliferation | 5.33e-08 | 239 |
carcinoma | 1.52e-07 | 106 |