FFCP PHASE1:Hg19::chr1:15736084..15736094,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79180 | |EntrezGene=79180 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28670 | |HGNC=28670 | ||
|TSSclassifier=strong | |||
|UniProt=Q96C19 | |UniProt=Q96C19 | ||
|association_with_transcript=-296bp_to_ENST00000375980,NM_024329,uc001awh.2_5end | |association_with_transcript=-296bp_to_ENST00000375980,NM_024329,uc001awh.2_5end | ||
|cluster_id=chr1:15736084..15736094,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_24_at_EFHD2_5end | |description=CAGE_peak_24_at_EFHD2_5end | ||
|id=chr1:15736084..15736094,+ | |id=chr1:15736084..15736094,+ | ||
|ontology_enrichment_celltype=CL:0000860!3.25e-35!45;CL:0002057!3.86e-35!42;CL:0000557!5.67e-30!71;CL:0000839!4.22e-28!70;CL:0002009!3.18e-26!65;CL:0000766!2.61e-25!76;CL:0002194!6.76e-25!63;CL:0000576!6.76e-25!63;CL:0000040!6.76e-25!63;CL:0000559!6.76e-25!63;CL:0002031!3.45e-19!124;CL:0000738!3.30e-17!140;CL:0000763!3.01e-16!112;CL:0000049!3.01e-16!112;CL:0002087!5.92e-16!119;CL:0000037!2.02e-12!172;CL:0000566!2.02e-12!172;CL:0002032!2.38e-12!165;CL:0000837!2.38e-12!165;CL:0000988!2.78e-11!182 | |ontology_enrichment_celltype=CL:0000860!3.25e-35!45;CL:0002057!3.86e-35!42;CL:0000557!5.67e-30!71;CL:0000839!4.22e-28!70;CL:0002009!3.18e-26!65;CL:0000766!2.61e-25!76;CL:0002194!6.76e-25!63;CL:0000576!6.76e-25!63;CL:0000040!6.76e-25!63;CL:0000559!6.76e-25!63;CL:0002031!3.45e-19!124;CL:0000738!3.30e-17!140;CL:0000763!3.01e-16!112;CL:0000049!3.01e-16!112;CL:0002087!5.92e-16!119;CL:0000037!2.02e-12!172;CL:0000566!2.02e-12!172;CL:0002032!2.38e-12!165;CL:0000837!2.38e-12!165;CL:0000988!2.78e-11!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.46e-16;33!CL:0002057;1.46e-16;33!CL:0000473;1.40e-11;39!CL:0000234;1.40e-11;39!CL:0000576;6.47e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.16e-13,42;CL:0002057,3.16e-13,42;CL:0000473,1.34e-11,48;CL:0000234,1.34e-11,48;CL:0002194,2.61e-09,59;CL:0000576,2.61e-09,59;CL:0000040,2.61e-09,59;CL:0000559,2.61e-09,59;CL:0002009,5.15e-09,61;CL:0000839,2.38e-08,66;CL:0000557,3.14e-08,67;CL:0000766,1.13e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.67e-23;1!UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10!UBERON:0003056;1.26e-08;3!CL:0002057;2.52e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.43e-26!80;UBERON:0001474!2.81e-25!86;UBERON:0004765!1.26e-23!101;UBERON:0001434!1.26e-23!101;UBERON:0002390!4.98e-20!102;UBERON:0003061!4.98e-20!102;UBERON:0002193!6.29e-19!112;UBERON:0002405!6.54e-17!115;UBERON:0002204!4.33e-11!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.67e-23;1!UBERON:0001785;3.67e-23;1!UBERON:0002464;3.67e-23;1!UBERON:0004904;3.67e-23;1!UBERON:0001021;3.67e-23;1!UBERON:0003714;2.74e-12;2!UBERON:0005162;2.74e-12;2!UBERON:0000122;2.74e-12;2!UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.10e-23,1;UBERON:0001785,2.10e-23,1;UBERON:0002464,2.10e-23,1;UBERON:0004904,2.10e-23,1;UBERON:0001021,2.10e-23,1;UBERON:0003902,2.10e-23,1;UBERON:0005425,2.10e-23,1;UBERON:0003714,2.07e-12,2;UBERON:0005162,2.07e-12,2;UBERON:0000122,2.07e-12,2;UBERON:0000473,3.54e-12,8;UBERON:0003135,4.08e-09,11;UBERON:0002371,2.80e-07,76;UBERON:0001781,7.70e-07,4;UBERON:0001474,9.31e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.434021741431704,0,0,0,0,0.377875943688809,0.485168122375632,0.464858073811369,0.822335776043652,0.619412741790207,0.28769239232215,0.256160706529101,0,0.344745680736619,0,1.35426486594342,0.564727018627814,0,0.224723484445085,1.22433556948361,0,1.27867425159808,0,0,0,0.290209238628584,1.13477044938228,2.4912889959823,0.502497330513487,0,0.65156653411535,0,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,1.30979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.171986032471617,0,0.0730893170861856,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0.0607495566580247,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.197318320688547,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,3.86471360913021,10.1826369459348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.434021741431704,0,0,0,0,0.377875943688809,0.485168122375632,0.464858073811369,0.822335776043652,0.619412741790207,0.28769239232215,0.256160706529101,0,0.344745680736619,0,1.35426486594342,0.564727018627814,0,0.224723484445085,1.22433556948361,0,1.27867425159808,0,0,0,0.290209238628584,1.13477044938228,2.4912889959823,0.502497330513487,0,0.65156653411535,0,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,1.30979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.171986032471617,0,0.0730893170861856,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0.0607495566580247,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.197318320688547,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,3.86471360913021,10.1826369459348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p24@EFHD2 | |short_description=p24@EFHD2 | ||
}} | }} |
Latest revision as of 19:04, 17 September 2015
Short description: | p24@EFHD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_EFHD2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -296bp_to_ENST00000375980, NM_024329, uc001awh.2_5end |
EntrezGene: | EFHD2 |
HGNC: | 28670 |
UniProt: | Q96C19 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.16e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.16e-13 | 42 |
defensive cell | 1.34e-11 | 48 |
phagocyte | 1.34e-11 | 48 |
monopoietic cell | 2.61e-09 | 59 |
monocyte | 2.61e-09 | 59 |
monoblast | 2.61e-09 | 59 |
promonocyte | 2.61e-09 | 59 |
macrophage dendritic cell progenitor | 5.15e-09 | 61 |
myeloid lineage restricted progenitor cell | 2.38e-08 | 66 |
granulocyte monocyte progenitor cell | 3.14e-08 | 67 |
myeloid leukocyte | 1.13e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.10e-23 | 1 |
cranial nerve | 2.10e-23 | 1 |
nerve trunk | 2.10e-23 | 1 |
nerve connecting eye with brain | 2.10e-23 | 1 |
nerve | 2.10e-23 | 1 |
retinal neural layer | 2.10e-23 | 1 |
presumptive neural retina | 2.10e-23 | 1 |
neural tissue | 2.07e-12 | 2 |
multi cell component structure | 2.07e-12 | 2 |
neuron projection bundle | 2.07e-12 | 2 |
testis | 3.54e-12 | 8 |
male reproductive organ | 4.08e-09 | 11 |
bone marrow | 2.80e-07 | 76 |
layer of retina | 7.70e-07 | 4 |
bone element | 9.31e-07 | 82 |