FFCP PHASE1:Hg19::chr1:158259558..158259570,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=911 | |EntrezGene=911 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1636 | |HGNC=1636 | ||
|TSSclassifier=strong | |||
|UniProt=E9PGC9,P29017 | |UniProt=E9PGC9,P29017 | ||
|association_with_transcript=0bp_to_ENST00000368169,NM_001765,uc001fru.2_5end | |association_with_transcript=0bp_to_ENST00000368169,NM_001765,uc001fru.2_5end | ||
|cluster_id=chr1:158259558..158259570,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_4_at_CD1C_5end | |description=CAGE_peak_4_at_CD1C_5end | ||
|id=chr1:158259558..158259570,+ | |id=chr1:158259558..158259570,+ | ||
|ontology_enrichment_celltype=CL:0002087!9.75e-40!119;CL:0000738!3.09e-38!140;CL:0002031!1.76e-32!124;CL:0000037!1.88e-29!172;CL:0000566!1.88e-29!172;CL:0002032!3.66e-27!165;CL:0000837!3.66e-27!165;CL:0000988!5.73e-27!182;CL:0000945!2.41e-25!24;CL:0000826!2.41e-25!24;CL:0000236!2.39e-20!14;CL:0000542!1.41e-18!53;CL:0000051!1.41e-18!53;CL:0002057!4.50e-18!42;CL:0002009!1.51e-17!65;CL:0000838!2.24e-17!52;CL:0000766!8.85e-17!76;CL:0002194!1.04e-16!63;CL:0000576!1.04e-16!63;CL:0000040!1.04e-16!63;CL:0000559!1.04e-16!63;CL:0000860!1.79e-16!45;CL:0000557!1.88e-15!71;CL:0000839!2.37e-14!70;CL:0000763!1.04e-10!112;CL:0000049!1.04e-10!112;CL:0000840!5.23e-10!5;CL:0001029!5.23e-10!5;CL:0000767!5.72e-08!3;CL:0000842!1.04e-07!3 | |ontology_enrichment_celltype=CL:0002087!9.75e-40!119;CL:0000738!3.09e-38!140;CL:0002031!1.76e-32!124;CL:0000037!1.88e-29!172;CL:0000566!1.88e-29!172;CL:0002032!3.66e-27!165;CL:0000837!3.66e-27!165;CL:0000988!5.73e-27!182;CL:0000945!2.41e-25!24;CL:0000826!2.41e-25!24;CL:0000236!2.39e-20!14;CL:0000542!1.41e-18!53;CL:0000051!1.41e-18!53;CL:0002057!4.50e-18!42;CL:0002009!1.51e-17!65;CL:0000838!2.24e-17!52;CL:0000766!8.85e-17!76;CL:0002194!1.04e-16!63;CL:0000576!1.04e-16!63;CL:0000040!1.04e-16!63;CL:0000559!1.04e-16!63;CL:0000860!1.79e-16!45;CL:0000557!1.88e-15!71;CL:0000839!2.37e-14!70;CL:0000763!1.04e-10!112;CL:0000049!1.04e-10!112;CL:0000840!5.23e-10!5;CL:0001029!5.23e-10!5;CL:0000767!5.72e-08!3;CL:0000842!1.04e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000236;6.38e-74;13!CL:0000945;2.94e-39;24!CL:0000542;4.57e-14;53!CL:0000840;9.92e-13;5!CL:0000990;1.18e-08;8!CL:0000451;3.65e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.28e-68,14;CL:0000945,2.58e-39,24;CL:0000826,2.58e-39,24;CL:0002087,2.88e-19,115;CL:0000738,8.16e-18,136;CL:0000838,3.61e-17,52;CL:0000542,8.24e-17,53;CL:0000051,8.24e-17,53;CL:0002031,3.47e-16,120;CL:0000037,8.39e-14,168;CL:0000988,6.21e-13,177;CL:0002032,7.33e-13,161;CL:0000837,7.33e-13,161;CL:0000840,1.07e-12,5;CL:0001029,1.07e-12,5;CL:0000990,1.24e-08,8;CL:0000451,3.81e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000051;4.57e-14;53!UBERON:0004872;8.67e-11;7!UBERON:0001045;1.56e-09;1!UBERON:0006242;4.32e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.72e-20!102;UBERON:0003061!5.72e-20!102;UBERON:0002193!8.47e-20!112;UBERON:0002371!3.84e-14!80;UBERON:0001474!1.21e-12!86;UBERON:0002405!4.16e-12!115;UBERON:0004765!1.03e-09!101;UBERON:0001434!1.03e-09!101;UBERON:0003081!3.05e-08!216 | |ontology_enrichment_uberon=UBERON:0002390!5.72e-20!102;UBERON:0003061!5.72e-20!102;UBERON:0002193!8.47e-20!112;UBERON:0002371!3.84e-14!80;UBERON:0001474!1.21e-12!86;UBERON:0002405!4.16e-12!115;UBERON:0004765!1.03e-09!101;UBERON:0001434!1.03e-09!101;UBERON:0003081!3.05e-08!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.73e-11;3!UBERON:0001154;1.56e-09;1!UBERON:0001153;1.56e-09;1!UBERON:0009854;1.56e-09;1!UBERON:0004177;3.09e-07;5!UBERON:0005057;3.09e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.43e-11,3;UBERON:0004854,1.43e-11,3;UBERON:0009034,1.43e-11,3;UBERON:0002095,1.43e-11,3;UBERON:0004782,1.43e-11,3;UBERON:0003281,1.43e-11,3;UBERON:0009664,1.43e-11,3;UBERON:0002296,1.43e-11,3;UBERON:0005602,1.43e-11,3;UBERON:0001179,1.43e-11,3;UBERON:0006293,1.43e-11,3;UBERON:0001154,1.56e-09,1;UBERON:0001153,1.56e-09,1;UBERON:0001045,1.56e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.410502947249729,0.550975469195755,0.786728553697808,0.767658796194425,1.08371286321253,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0.436194716338694,0.377875943688809,0.485168122375632,0,0,0.309706370895104,0.575384784644301,0.512321413058201,0.47296445977717,0,0.645484683583826,0,0.376484679085209,0,0,0,0.641858054152187,0,0,0.598390972864896,0,0,0.56738522469114,0.622822248995575,0,0.521482918420201,0.434377689410233,0,0,0,0,1.06302149982522,1.25795187305026,1.01095768031846,0.750884464207532,0,0,0.19891667719909,0,5.27988733383968,12.561188059029,7.11607403090844,9.81479511902967,11.6114836240444,5.17277195959035,3.30522436392431,12.4026988089597,1.70763890732835,3.52342313622563,3.05818582500183,0,0,0,0,0,0.205601498999509,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,2.27183175558278,3.13433527138681,10.6366368415092,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0,0,0,3.17250070517708,0,0,0,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,4.14425873296722,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0.394028536495991,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,3.47740496525458,1.61144719933943,0,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0,0.186224142887574,0,0,0.404234377916439,0.217716747896961,0,0.5388164241167,0,0,0,0,0,0,0,0,0,0,3.22038069745642,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.410502947249729,0.550975469195755,0.786728553697808,0.767658796194425,1.08371286321253,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0.436194716338694,0.377875943688809,0.485168122375632,0,0,0.309706370895104,0.575384784644301,0.512321413058201,0.47296445977717,0,0.645484683583826,0,0.376484679085209,0,0,0,0.641858054152187,0,0,0.598390972864896,0,0,0.56738522469114,0.622822248995575,0,0.521482918420201,0.434377689410233,0,0,0,0,1.06302149982522,1.25795187305026,1.01095768031846,0.750884464207532,0,0,0.19891667719909,0,5.27988733383968,12.561188059029,7.11607403090844,9.81479511902967,11.6114836240444,5.17277195959035,3.30522436392431,12.4026988089597,1.70763890732835,3.52342313622563,3.05818582500183,0,0,0,0,0,0.205601498999509,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,2.27183175558278,3.13433527138681,10.6366368415092,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0,0,0,3.17250070517708,0,0,0,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,4.14425873296722,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0.394028536495991,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,3.47740496525458,1.61144719933943,0,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0,0.186224142887574,0,0,0.404234377916439,0.217716747896961,0,0.5388164241167,0,0,0,0,0,0,0,0,0,0,3.22038069745642,0.641136984606466 | ||
|short_description=p4@CD1C | |short_description=p4@CD1C | ||
}} | }} |
Latest revision as of 20:22, 17 September 2015
Short description: | p4@CD1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CD1C_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_ENST00000368169, NM_001765, uc001fru.2_5end |
EntrezGene: | CD1C |
HGNC: | 1636 |
UniProt: | E9PGC9P29017 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.28e-68 | 14 |
lymphocyte of B lineage | 2.58e-39 | 24 |
pro-B cell | 2.58e-39 | 24 |
nongranular leukocyte | 2.88e-19 | 115 |
leukocyte | 8.16e-18 | 136 |
lymphoid lineage restricted progenitor cell | 3.61e-17 | 52 |
lymphocyte | 8.24e-17 | 53 |
common lymphoid progenitor | 8.24e-17 | 53 |
hematopoietic lineage restricted progenitor cell | 3.47e-16 | 120 |
hematopoietic stem cell | 8.39e-14 | 168 |
hematopoietic cell | 6.21e-13 | 177 |
hematopoietic oligopotent progenitor cell | 7.33e-13 | 161 |
hematopoietic multipotent progenitor cell | 7.33e-13 | 161 |
immature conventional dendritic cell | 1.07e-12 | 5 |
common dendritic progenitor | 1.07e-12 | 5 |
conventional dendritic cell | 1.24e-08 | 8 |
dendritic cell | 3.81e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.43e-11 | 3 |
gastrointestinal system mesentery | 1.43e-11 | 3 |
stomach region | 1.43e-11 | 3 |
mesentery | 1.43e-11 | 3 |
gastrointestinal system serosa | 1.43e-11 | 3 |
mesentery of stomach | 1.43e-11 | 3 |
gut mesentery | 1.43e-11 | 3 |
dorsal mesentery | 1.43e-11 | 3 |
dorsal mesogastrium | 1.43e-11 | 3 |
peritoneal cavity | 1.43e-11 | 3 |
spleen primordium | 1.43e-11 | 3 |
vermiform appendix | 1.56e-09 | 1 |
caecum | 1.56e-09 | 1 |
midgut | 1.56e-09 | 1 |