FFCP PHASE1:Hg19::chr12:24103844..24103880,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6660 | |EntrezGene=6660 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11201 | |HGNC=11201 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UN79,G3V0G7 | |UniProt=Q9UN79,G3V0G7 | ||
|association_with_transcript=0bp_to_ENST00000367206,ENST00000435266,uc001rfz.1_5end | |association_with_transcript=0bp_to_ENST00000367206,ENST00000435266,uc001rfz.1_5end | ||
|cluster_id=chr12:24103844..24103880,- | |||
|description=CAGE_peak_3_at_SOX5_5end | |description=CAGE_peak_3_at_SOX5_5end | ||
|id=chr12:24103844..24103880,- | |id=chr12:24103844..24103880,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;5.83e-10;12!CL:0000047;9.30e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,7.94e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.52e-08;11!UBERON:0009497;8.51e-07;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!9.32e-31!86;UBERON:0001049!2.96e-30!57;UBERON:0005068!2.96e-30!57;UBERON:0006241!2.96e-30!57;UBERON:0007135!2.96e-30!57;UBERON:0001017!1.45e-29!82;UBERON:0003075!2.17e-29!86;UBERON:0007284!2.17e-29!86;UBERON:0007023!8.36e-29!115;UBERON:0002346!1.62e-28!90;UBERON:0000073!6.17e-28!94;UBERON:0001016!6.17e-28!94;UBERON:0002616!1.28e-26!59;UBERON:0002780!6.61e-25!41;UBERON:0001890!6.61e-25!41;UBERON:0006240!6.61e-25!41;UBERON:0000955!2.16e-24!69;UBERON:0006238!2.16e-24!69;UBERON:0003080!5.44e-24!42;UBERON:0003056!3.70e-23!61;UBERON:0001893!3.23e-21!34;UBERON:0002020!3.59e-21!34;UBERON:0003528!3.59e-21!34;UBERON:0002791!1.48e-20!33;UBERON:0001869!1.50e-19!32;UBERON:0000153!3.61e-17!129;UBERON:0007811!3.61e-17!129;UBERON:0004121!5.21e-17!169;UBERON:0000924!7.28e-17!173;UBERON:0006601!7.28e-17!173;UBERON:0000033!1.10e-16!123;UBERON:0000956!2.10e-16!25;UBERON:0000203!2.10e-16!25;UBERON:0001950!6.84e-14!20;UBERON:0002619!7.84e-14!22;UBERON:0000025!5.61e-11!194;UBERON:0000481!1.69e-10!347;UBERON:0004111!1.39e-09!241;UBERON:0000483!1.49e-09!309;UBERON:0000119!3.41e-09!312;UBERON:0000477!7.02e-09!286;UBERON:0000922!7.80e-08!612;UBERON:0001871!8.81e-08!7;UBERON:0000062!1.22e-07!511;UBERON:0003076!1.83e-07!15;UBERON:0003057!1.83e-07!15;UBERON:0000475!6.35e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.46e-15;25!UBERON:0000203;1.46e-15;25!UBERON:0002780;1.62e-14;41!UBERON:0001890;1.62e-14;41!UBERON:0002791;1.44e-13;32!UBERON:0000073;3.28e-13;53!UBERON:0002616;3.28e-13;53!UBERON:0001893;3.95e-13;34!UBERON:0002619;5.41e-13;22!UBERON:0003528;1.82e-12;34!UBERON:0002020;1.82e-12;34!UBERON:0001950;4.79e-12;20!UBERON:0001869;1.17e-11;32!UBERON:0000922;3.83e-09;49!UBERON:0001016;8.61e-09;83!UBERON:0000955;1.44e-07;68!UBERON:0002107;1.69e-07;19!UBERON:0006925;1.69e-07;19!UBERON:0001017;4.07e-07;75!UBERON:0002368;5.17e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.00e-22,56;UBERON:0005068,4.00e-22,56;UBERON:0006241,4.00e-22,56;UBERON:0007135,4.00e-22,56;UBERON:0001017,7.36e-22,81;UBERON:0002346,1.28e-20,86;UBERON:0001016,2.25e-20,89;UBERON:0003075,2.61e-20,82;UBERON:0007284,2.61e-20,82;UBERON:0000073,1.12e-19,53;UBERON:0002616,1.12e-19,53;UBERON:0002780,2.70e-18,41;UBERON:0001890,2.70e-18,41;UBERON:0003080,2.70e-18,41;UBERON:0006240,2.70e-18,41;UBERON:0010371,7.83e-17,104;UBERON:0003056,9.18e-17,61;UBERON:0000955,1.14e-16,68;UBERON:0006238,1.14e-16,68;UBERON:0001893,6.98e-16,34;UBERON:0004121,2.65e-15,171;UBERON:0000924,2.65e-15,171;UBERON:0006601,2.65e-15,171;UBERON:0000956,3.00e-15,25;UBERON:0000203,3.00e-15,25;UBERON:0002791,5.14e-15,32;UBERON:0011216,4.89e-14,223;UBERON:0003528,6.29e-14,34;UBERON:0002020,6.29e-14,34;UBERON:0001869,4.02e-13,32;UBERON:0002619,1.24e-12,22;UBERON:0001950,1.03e-11,20;UBERON:0010314,1.15e-09,132;UBERON:0000025,5.65e-08,192;UBERON:0007023,1.31e-07,114;UBERON:0002107,2.17e-07,19;UBERON:0006925,2.17e-07,19;UBERON:0008836,2.17e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.37129905888014,0,0,0,0,0,0.246242116153576,0,0,4.57977579409691,0.958120975510189,1.75759695432724,0.0764134057479513,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.869079113764942,8.74814541756209,3.40644409211845,4.06499713805492,0.221729397462564,1.84453049955565,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0.326923806226917,0.302714855289863,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,0.69716365721711,1.96956004529204,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,1.18157981336281,0,0.245976877086227,0.171567810298526,0,0,0,0,0,0,0,3.94163376915261,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0.253991577168676,0,1.17217447210047,0,1.33675740514321,0,6.28818151787272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,8.13102797511883,5.20559415430487,0,1.84267891867784,1.27587750330633,0,0,0,0.49076596687656,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.846016147141356,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,1.44257416306811,0,0,0,0,0,0.676695028044854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0.318203247925937,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0,0,0.551365343546124,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,1.69458841398202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.485442086998054,0,0,0,0,0,0.994147647766298,1.1253553312841,0,0,0,0.996239941255349,0.552567831062295,5.54252045279407,0.306806047506464,0,0,0,0,0,0.591860433821602,0,0,0,1.39152147242777,3.99227596002388,0,0,0,0,0.254253650292766,0,0,0,0.520874984799877,1.77148277162768,0.964771509003264,1.52581736317083,0.552896299656123,0,0.438770794307945,0,0,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0.167821586975843,0,0,0,0.489698424477443,0,5.19332735381019,0,0.0884575645033392,0,0,0,0,1.55022605855557,0.802577647298789,0.234264445725339,0,0.19566461893209,0,0.394584402849391,1.20990716048664,14.385419796633,0.252746318513952,3.90840890477681,0.414752765588989,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,1.58186518546373,0,0,1.32952671507345,0,0,0.85381197895741,0,0,0.343609788497747,3.60349495510126,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,1.95497680890578,0.458320848023367,0,0,0,0.446342914883745,0.806201669840715,0,3.49487848582361,9.37519869455961,7.17017967916148,7.88621463093963,0,0,0,2.04305109167363,0,0.275078873194468,0,0,0,1.15424157650247,0,0.551639951094387,1.41627387964495,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0.904980694530854,0.92562821219883,0,0,0.320362237703084,3.14408610199332,0,0,0,0.365377795142688,0,0,0,0.306345576763462,0,0,0,0.366078794705889,1.251909307065,0.573409195690071,1.33114861844223,1.24192805882767,0,0,2.72968411574966,1.99825733481477,0,0,0.579684114443301,0.149254802886874,0,0,0.757612021100357,0.251567901752575,0.889811221596536,0,0,0.621748802331122,0.147855149989634,0.796483835818512,0.449803112163605,0.155262956876259,0,0,0.521745061811734,0,0,0.813741466409323,0.181848659202559,0.859284456339908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65910123382077,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0.368211900503681,0,0,2.17420431216208,0.215649622793364,0,0,0,0,4.70955904184208,0,0,0.394308725006267,3.20228299314188,0,0,0.834979926253974,0,1.43670473151436,0.205116364240755,13.1077282035293,0.899044282034833,0.484426936895553,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.742913430802341,0.781078098613847,0.826747186004736,1.01465296310251,20.2380679336741,0,0.496211178389294,0,0.255524855279191,2.14280734351315,4.37168838884471,0,2.95960848756687,0.354809480650555,0.115233987555779,1.20041606606193,1.97112225632812,0.657727735628491,0,0,0.235479278551542,0.628462359664008,0,2.73947616152849,0.431855182437243,0,3.57382720883282,0.158013611732727,1.62737995515375,0,0,0.207216164163037,0,0,5.59295566466361,0,0,0.423387050190929,0.22910686854405,0,0,0.559277158988962,0.490751168076215,0,0,0,0,0,1.16969731731053,2.38740930193642,0,0.11294608203896,0.109940516745429,0.905777061400041,0.463044948647668,0.437119121007915,26.8080858926068,0.245148321753905,5.4205605833374,0.392616934229891,2.37637120261669,2.5359343655004,0,0.187967835959707,0.386747327841463,0,0,0,0,0.730336388246517,1.83491713361816,1.29005624836306,0.946629373159108,0.815897882290976,9.5997151874883,2.645134202577,0,0,0,0.630832124175395,1.09265571963696,0,0.203977659483963,0,0,0,0,0,0.829169439458779,0.827463966895162,1.49263787330687,1.1903221573187,0,0.0620747142958579,0,0.12729431655633,0,0.435433495793923,0,0.404112318087525,0.430333232356058,0.99798106963804,0.0814032686109745,0,0,0,2.34640942403454,3.05603610457166,1.22068853494722,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.37129905888014,0,0,0,0,0,0.246242116153576,0,0,4.57977579409691,0.958120975510189,1.75759695432724,0.0764134057479513,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.869079113764942,8.74814541756209,3.40644409211845,4.06499713805492,0.221729397462564,1.84453049955565,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0.326923806226917,0.302714855289863,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,0.69716365721711,1.96956004529204,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,1.18157981336281,0,0.245976877086227,0.171567810298526,0,0,0,0,0,0,0,3.94163376915261,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0.253991577168676,0,1.17217447210047,0,1.33675740514321,0,6.28818151787272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,8.13102797511883,5.20559415430487,0,1.84267891867784,1.27587750330633,0,0,0,0.49076596687656,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.846016147141356,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,1.44257416306811,0,0,0,0,0,0.676695028044854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0.318203247925937,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0,0,0.551365343546124,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,1.69458841398202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.485442086998054,0,0,0,0,0,0.994147647766298,1.1253553312841,0,0,0,0.996239941255349,0.552567831062295,5.54252045279407,0.306806047506464,0,0,0,0,0,0.591860433821602,0,0,0,1.39152147242777,3.99227596002388,0,0,0,0,0.254253650292766,0,0,0,0.520874984799877,1.77148277162768,0.964771509003264,1.52581736317083,0.552896299656123,0,0.438770794307945,0,0,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0.167821586975843,0,0,0,0.489698424477443,0,5.19332735381019,0,0.0884575645033392,0,0,0,0,1.55022605855557,0.802577647298789,0.234264445725339,0,0.19566461893209,0,0.394584402849391,1.20990716048664,14.385419796633,0.252746318513952,3.90840890477681,0.414752765588989,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,1.58186518546373,0,0,1.32952671507345,0,0,0.85381197895741,0,0,0.343609788497747,3.60349495510126,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,1.95497680890578,0.458320848023367,0,0,0,0.446342914883745,0.806201669840715,0,3.49487848582361,9.37519869455961,7.17017967916148,7.88621463093963,0,0,0,2.04305109167363,0,0.275078873194468,0,0,0,1.15424157650247,0,0.551639951094387,1.41627387964495,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0.904980694530854,0.92562821219883,0,0,0.320362237703084,3.14408610199332,0,0,0,0.365377795142688,0,0,0,0.306345576763462,0,0,0,0.366078794705889,1.251909307065,0.573409195690071,1.33114861844223,1.24192805882767,0,0,2.72968411574966,1.99825733481477,0,0,0.579684114443301,0.149254802886874,0,0,0.757612021100357,0.251567901752575,0.889811221596536,0,0,0.621748802331122,0.147855149989634,0.796483835818512,0.449803112163605,0.155262956876259,0,0,0.521745061811734,0,0,0.813741466409323,0.181848659202559,0.859284456339908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65910123382077,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0.368211900503681,0,0,2.17420431216208,0.215649622793364,0,0,0,0,4.70955904184208,0,0,0.394308725006267,3.20228299314188,0,0,0.834979926253974,0,1.43670473151436,0.205116364240755,13.1077282035293,0.899044282034833,0.484426936895553,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.742913430802341,0.781078098613847,0.826747186004736,1.01465296310251,20.2380679336741,0,0.496211178389294,0,0.255524855279191,2.14280734351315,4.37168838884471,0,2.95960848756687,0.354809480650555,0.115233987555779,1.20041606606193,1.97112225632812,0.657727735628491,0,0,0.235479278551542,0.628462359664008,0,2.73947616152849,0.431855182437243,0,3.57382720883282,0.158013611732727,1.62737995515375,0,0,0.207216164163037,0,0,5.59295566466361,0,0,0.423387050190929,0.22910686854405,0,0,0.559277158988962,0.490751168076215,0,0,0,0,0,1.16969731731053,2.38740930193642,0,0.11294608203896,0.109940516745429,0.905777061400041,0.463044948647668,0.437119121007915,26.8080858926068,0.245148321753905,5.4205605833374,0.392616934229891,2.37637120261669,2.5359343655004,0,0.187967835959707,0.386747327841463,0,0,0,0,0.730336388246517,1.83491713361816,1.29005624836306,0.946629373159108,0.815897882290976,9.5997151874883,2.645134202577,0,0,0,0.630832124175395,1.09265571963696,0,0.203977659483963,0,0,0,0,0,0.829169439458779,0.827463966895162,1.49263787330687,1.1903221573187,0,0.0620747142958579,0,0.12729431655633,0,0.435433495793923,0,0.404112318087525,0.430333232356058,0.99798106963804,0.0814032686109745,0,0,0,2.34640942403454,3.05603610457166,1.22068853494722,0,0.402547587182052,0 | ||
|short_description=p3@SOX5 | |short_description=p3@SOX5 | ||
}} | }} |
Latest revision as of 20:59, 17 September 2015
Short description: | p3@SOX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SOX5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000367206, ENST00000435266, uc001rfz.1_5end |
EntrezGene: | SOX5 |
HGNC: | 11201 |
UniProt: | Q9UN79G3V0G7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 7.94e-10 | 12 |