FFCP PHASE1:Hg19::chr19:3979943..3980013,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1938 | |EntrezGene=1938 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3214 | |HGNC=3214 | ||
|TSSclassifier=strong | |||
|UniProt=P13639 | |UniProt=P13639 | ||
|association_with_transcript=-31bp_to_M19997_5end | |association_with_transcript=-31bp_to_M19997_5end | ||
|cluster_id=chr19:3979943..3980013,- | |||
|coexpression_cluster_id=C2488 | |||
|description=CAGE_peak_4_at_EEF2_5end | |description=CAGE_peak_4_at_EEF2_5end | ||
|id=chr19:3979943..3980013,- | |id=chr19:3979943..3980013,- | ||
|ontology_enrichment_celltype=CL:0000393!2.33e-08!60;CL:0000211!2.33e-08!60;CL:0000183!2.52e-08!59;CL:0000222!4.45e-08!119;CL:0002321!6.52e-08!248;CL:0000220!1.00e-07!246;CL:0000187!2.20e-07!54;CL:0000680!2.33e-07!57;CL:0000056!2.33e-07!57;CL:0000355!2.33e-07!57;CL:0000192!2.63e-07!42;CL:0000514!2.63e-07!42;CL:0000055!8.79e-07!180 | |ontology_enrichment_celltype=CL:0000393!2.33e-08!60;CL:0000211!2.33e-08!60;CL:0000183!2.52e-08!59;CL:0000222!4.45e-08!119;CL:0002321!6.52e-08!248;CL:0000220!1.00e-07!246;CL:0000187!2.20e-07!54;CL:0000680!2.33e-07!57;CL:0000056!2.33e-07!57;CL:0000355!2.33e-07!57;CL:0000192!2.63e-07!42;CL:0000514!2.63e-07!42;CL:0000055!8.79e-07!180 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.15e-08,61;CL:0000211,1.15e-08,61;CL:0000222,2.41e-08,121;CL:0002321,7.39e-08,250;CL:0000187,1.11e-07,55;CL:0000680,1.19e-07,58;CL:0000056,1.19e-07,58;CL:0000355,1.19e-07,58;CL:0000192,1.29e-07,43;CL:0000514,1.29e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!2.57e-09!70;UBERON:0001134!7.08e-09!61;UBERON:0002036!7.08e-09!61;UBERON:0003082!7.08e-09!61;UBERON:0002385!1.02e-08!63;UBERON:0001015!1.02e-08!63;UBERON:0000383!1.02e-08!63;UBERON:0005256!2.98e-08!143;UBERON:0000486!6.18e-08!82;UBERON:0000914!6.86e-08!83;UBERON:0002329!6.86e-08!83;UBERON:0003077!6.86e-08!83;UBERON:0003059!6.86e-08!83;UBERON:0007282!6.86e-08!83;UBERON:0009618!6.86e-08!83;UBERON:0007285!6.86e-08!83 | |ontology_enrichment_uberon=UBERON:0004290!2.57e-09!70;UBERON:0001134!7.08e-09!61;UBERON:0002036!7.08e-09!61;UBERON:0003082!7.08e-09!61;UBERON:0002385!1.02e-08!63;UBERON:0001015!1.02e-08!63;UBERON:0000383!1.02e-08!63;UBERON:0005256!2.98e-08!143;UBERON:0000486!6.18e-08!82;UBERON:0000914!6.86e-08!83;UBERON:0002329!6.86e-08!83;UBERON:0003077!6.86e-08!83;UBERON:0003059!6.86e-08!83;UBERON:0007282!6.86e-08!83;UBERON:0009618!6.86e-08!83;UBERON:0007285!6.86e-08!83 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.23e-11,78;UBERON:0002329,1.24e-09,71;UBERON:0003059,1.24e-09,71;UBERON:0007282,1.24e-09,71;UBERON:0004290,1.24e-09,71;UBERON:0009618,1.24e-09,71;UBERON:0007524,1.46e-09,73;UBERON:0003077,3.25e-09,72;UBERON:0007285,3.25e-09,72;UBERON:0001134,3.43e-09,62;UBERON:0002036,3.43e-09,62;UBERON:0003082,3.43e-09,62;UBERON:0002385,5.00e-09,64;UBERON:0001015,5.00e-09,64;UBERON:0000383,5.00e-09,64;UBERON:0005256,1.14e-08,122;UBERON:0003104,1.99e-08,160;UBERON:0009142,1.99e-08,160;UBERON:0000486,3.01e-08,83;UBERON:0000490,2.39e-07,148 | |||
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| ||
|short_description=p4@EEF2 | |short_description=p4@EEF2 | ||
}} | }} |
Latest revision as of 21:49, 17 September 2015
Short description: | p4@EEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_EEF2_5end |
Coexpression cluster: | C2488_skeletal_Bronchial_Mesenchymal_Adipocyte_iPS_Smooth_pancreas |
Association with transcript: | -31bp_to_M19997_5end |
EntrezGene: | EEF2 |
HGNC: | 3214 |
UniProt: | P13639 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.15e-08 | 61 |
electrically active cell | 1.15e-08 | 61 |
mesodermal cell | 2.41e-08 | 121 |
embryonic cell | 7.39e-08 | 250 |
muscle cell | 1.11e-07 | 55 |
muscle precursor cell | 1.19e-07 | 58 |
myoblast | 1.19e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.19e-07 | 58 |
smooth muscle cell | 1.29e-07 | 43 |
smooth muscle myoblast | 1.29e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.23e-11 | 78 |
somite | 1.24e-09 | 71 |
presomitic mesoderm | 1.24e-09 | 71 |
presumptive segmental plate | 1.24e-09 | 71 |
dermomyotome | 1.24e-09 | 71 |
trunk paraxial mesoderm | 1.24e-09 | 71 |
dense mesenchyme tissue | 1.46e-09 | 73 |
paraxial mesoderm | 3.25e-09 | 72 |
presumptive paraxial mesoderm | 3.25e-09 | 72 |
skeletal muscle tissue | 3.43e-09 | 62 |
striated muscle tissue | 3.43e-09 | 62 |
myotome | 3.43e-09 | 62 |
muscle tissue | 5.00e-09 | 64 |
musculature | 5.00e-09 | 64 |
musculature of body | 5.00e-09 | 64 |
trunk mesenchyme | 1.14e-08 | 122 |
mesenchyme | 1.99e-08 | 160 |
entire embryonic mesenchyme | 1.99e-08 | 160 |
multilaminar epithelium | 3.01e-08 | 83 |
unilaminar epithelium | 2.39e-07 | 148 |