FFCP PHASE1:Hg19::chr3:29322806..29322850,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27303 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13427 | |||
|TSSclassifier=strong | |||
|UniProt=Q6XE24 | |||
|association_with_transcript=0bp_to_ENST00000383767_5end | |||
|cluster_id=chr3:29322806..29322850,+ | |||
|description=CAGE_peak_2_at_RBMS3_5end | |||
|id=chr3:29322806..29322850,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.45e-15!180;CL:0000222!1.65e-11!119;CL:0000057!2.24e-10!75;CL:0000680!3.82e-08!57;CL:0000056!3.82e-08!57;CL:0000355!3.82e-08!57;CL:0000187!1.89e-07!54;CL:0000183!4.87e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.88e-10,121;CL:0000057,2.22e-09,76;CL:0000680,1.35e-07,58;CL:0000056,1.35e-07,58;CL:0000355,1.35e-07,58;CL:0000187,8.31e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!4.36e-12!365;UBERON:0000481!1.99e-09!347;UBERON:0000477!2.91e-09!286;UBERON:0000914!7.22e-09!83;UBERON:0002329!7.22e-09!83;UBERON:0003077!7.22e-09!83;UBERON:0003059!7.22e-09!83;UBERON:0007282!7.22e-09!83;UBERON:0009618!7.22e-09!83;UBERON:0007285!7.22e-09!83;UBERON:0001134!1.77e-08!61;UBERON:0002036!1.77e-08!61;UBERON:0003082!1.77e-08!61;UBERON:0005256!2.96e-08!143;UBERON:0002100!6.04e-08!216;UBERON:0004290!6.84e-08!70;UBERON:0002385!7.64e-08!63;UBERON:0001015!7.64e-08!63;UBERON:0000383!7.64e-08!63;UBERON:0000119!9.39e-08!312;UBERON:0000483!1.67e-07!309;UBERON:0000486!2.24e-07!82;UBERON:0002049!4.09e-07!79;UBERON:0007798!4.09e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.31e-08,62;UBERON:0002036,3.31e-08,62;UBERON:0003082,3.31e-08,62;UBERON:0002385,1.50e-07,64;UBERON:0001015,1.50e-07,64;UBERON:0000383,1.50e-07,64;UBERON:0002329,3.35e-07,71;UBERON:0003059,3.35e-07,71;UBERON:0007282,3.35e-07,71;UBERON:0004290,3.35e-07,71;UBERON:0009618,3.35e-07,71;UBERON:0007524,4.46e-07,73;UBERON:0005256,4.61e-07,122;UBERON:0003104,4.70e-07,160;UBERON:0009142,4.70e-07,160;UBERON:0003077,6.36e-07,72;UBERON:0007285,6.36e-07,72 | |||
|phase1_expression=5.99538651592837,3.21150785836475,6.90676580070259,3.00219895059391,0.893922188854576,0,0,0.631719873426831,0.522371256399677,0.491467873003018,0.697801167972428,1.74753097704138,1.84636884759917,2.22779435328084,0.662794751455832,2.01697543935533,2.41077811209591,0.730310090387373,1.95173119516203,0.369363174230364,0.408001382488506,0,1.43117993565528,1.23186982565596,1.25542639594803,1.75750833220288,1.47781061009902,2.75487734597877,0.393364276848904,0,0.154816123316076,0,0,0,0,0.853015394924529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0.411202997999018,1.00311897234407,12.3850461320764,10.4158517261641,17.534405556712,0.222820913770347,0.883817722424512,0.886135578334485,1.89562704635511,0,0.130059347559878,0.328875809207352,0.552700035571697,0.289803085735052,0.14828656316206,0.267540828089713,0,0,0.383220493601921,0.68725489096526,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0,0,14.6284119788377,4.02420515822182,2.04580098949649,1.80719576192283,2.00535164254356,1.88300474649071,2.3858578411533,0,2.3633704291017,3.32594096193846,2.98638271356629,1.30979075497713,0,0,0,0,0,1.90792499444274,1.14398982156026,0.74291500265913,0.79504962946682,0,1.73570250803797,1.69592382577203,0,1.37559020970034,1.04497483268405,0.775250277507987,2.84613010149368,2.34304428935269,1.61131726843659,0.760272105718513,0.976248230192678,0.735326160691737,0.81014194788176,2.67899184852239,0.673588117878509,2.13961812918312,0,1.89853131913626,0.732806975721629,0,0,0.436094052142534,4.96971951695318,2.15271869829786,4.76673050927588,3.72887606973458,2.12801029319014,1.12135520028461,1.06748995729705,0.74000264525148,4.04574346019696,3.09834545760283,1.47115712802113,0.908144565869588,1.72852777344,1.17160715916898,0.624320153660641,0,0.298897361103602,1.05691048779388,0.647491777472526,0.421352420106746,2.04154171254893,1.10550885580591,3.09977343527296,3.56400857184616,1.48360157567134,0.910161361938026,1.43723628363248,0.841680569770331,1.87677779807946,0.554128230968366,3.5118209670467,2.75839016219118,1.50238058906597,0.794025282120147,3.7671823494661,1.06778694409284,1.69545520927649,4.20127534518163,1.95799805553034,3.86460810068444,2.41951913231067,4.38818463827292,1.55899208257918,6.31084435610286,3.22174645248048,1.61646056818812,1.42003837006646,0.806016785821122,0.508681776931463,0.386521706326594,1.09098448236334,0.860413786167011,0,0.132529768321485,0.232387885739037,0.10366105501537,0,0,1.56449532329816,1.28648187638577,1.38134921352481,2.78620756819187,0.721879481669586,0.118306800039844,0.337169380156203,0.482022059766964,0.330881918197182,0.217879444092406,0,0.134831308160164,0.392442930250692,0,0,0,0.4115740113314,0,0,0,1.18157981336281,0.441463099414651,0.122988438543114,1.3725424823882,0.439001141634502,1.1240175325762,0.301586917234893,0.925884451585296,0.325808305310325,0,0,0.579652024875384,1.99594780200897,1.29929802984966,0.925971025153221,1.90254152234598,0,0,0,0,0,0,3.02367830757947,0.567100388969546,0.626909658919938,0.290633938513962,0,0,0,0.207328115540772,0,0,0.190493682876507,0,0,0,0.411309970813294,0,0.285826432630578,0.784917590417525,1.30788020649984,1.6134422880609,0.646358578788889,3.57656445851882,0,0.26593811658487,0,1.02882949704857,1.41849132023278,1.0656887160644,3.71742783511184,3.25572963234866,2.46972101034231,0.977208552881205,2.13235169245527,0.791951872933429,2.1100756394171,5.22920075160176,2.39935178836937,0,0,0,1.19812427745791,1.14861935834114,4.27910715122155,2.75084482668401,1.84928690295345,1.43248770591916,0,0.197030760201927,0.646882724578552,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,2.82190430954022,1.00034104211935,0.542530047399471,1.45579603071565,1.24900292158013,2.20783381047509,1.05427273493442,0,2.27407504055985,1.03473071292505,2.65690239414175,0,0.868836144680828,0.587403472388222,0.343143423810856,1.03384013061444,0,0,0,0,0.604780586659361,5.21026396419431,8.13348458426731,3.64858122762996,5.38184426873944,3.58195074346692,3.05622450172854,0,1.07946785661859,0.710246901252508,1.64254312027618,2.59627214591811,0.232420756919918,0.604297247958111,0.802025881213139,0.0920809889358963,1.7222167224691,1.27463817604702,0.917870904715969,0.902399225814824,1.23224539367064,0,1.46139224653261,0.844413031143006,0,0.680374821106063,1.51141141271498,1.54227252690289,1.35473218771926,0.501689773854853,0.254876273045038,0,1.11937377361089,0,0,0.256450125116389,0.984043937099117,0.325378394664303,1.33953315142039,1.19040304263846,0.330037999682352,0,1.30012049207304,4.82051789532479,0.580024309752732,1.3864375540318,1.84204409671355,1.37836572484531,5.90811346775505,4.20548412351263,1.87498580315422,0.890320356467374,0.826424576804891,1.53752053892085,4.97689578728878,0.4046311234222,0,1.5740617341532,0,2.46426864140871,2.12922412126809,0.869932992075073,0.74129687641568,1.86062352764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| |||
|short_description=p2@RBMS3 | |||
}} |
Latest revision as of 21:50, 17 September 2015
Short description: | p2@RBMS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RBMS3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000383767_5end |
EntrezGene: | RBMS3 |
HGNC: | 13427 |
UniProt: | Q6XE24 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.88e-10 | 121 |
fibroblast | 2.22e-09 | 76 |
muscle precursor cell | 1.35e-07 | 58 |
myoblast | 1.35e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.35e-07 | 58 |
muscle cell | 8.31e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 3.31e-08 | 62 |
striated muscle tissue | 3.31e-08 | 62 |
myotome | 3.31e-08 | 62 |
muscle tissue | 1.50e-07 | 64 |
musculature | 1.50e-07 | 64 |
musculature of body | 1.50e-07 | 64 |
somite | 3.35e-07 | 71 |
presomitic mesoderm | 3.35e-07 | 71 |
presumptive segmental plate | 3.35e-07 | 71 |
dermomyotome | 3.35e-07 | 71 |
trunk paraxial mesoderm | 3.35e-07 | 71 |
dense mesenchyme tissue | 4.46e-07 | 73 |
trunk mesenchyme | 4.61e-07 | 122 |
mesenchyme | 4.70e-07 | 160 |
entire embryonic mesenchyme | 4.70e-07 | 160 |
paraxial mesoderm | 6.36e-07 | 72 |
presumptive paraxial mesoderm | 6.36e-07 | 72 |