FFCP PHASE1:Hg19::chr15:49255330..49255353,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:49255330..49255353,-
|short_description=p3@SHC4
|description=CAGE_peak_3_at_SHC4_5end
|association_with_transcript=287bp_to_ENST00000332408,NM_203349,uc00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=399694 | |EntrezGene=399694 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16743 | |HGNC=16743 | ||
|TSSclassifier=strong | |||
|UniProt=Q6S5L8 | |UniProt=Q6S5L8 | ||
|association_with_transcript=287bp_to_ENST00000332408,NM_203349,uc001zxb.1_5end | |||
|cluster_id=chr15:49255330..49255353,- | |||
|coexpression_cluster_id=C2337 | |||
|description=CAGE_peak_3_at_SHC4_5end | |||
|id=chr15:49255330..49255353,- | |||
|ontology_enrichment_celltype=CL:0000148!9.99e-08!10;CL:0000541!9.99e-08!10;CL:0000075!2.46e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.44e-21;10!CL:0000147;2.49e-19;14!CL:0002567;2.34e-14;3!CL:0000710;3.52e-10;20!CL:0000075;2.14e-09;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.71e-21,10;CL:0000541,1.71e-21,10;CL:0000147,1.69e-19,14;CL:0002567,1.75e-14,3;CL:0000710,2.97e-10,20;CL:0000075,1.79e-09,27;CL:0000333,5.49e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0006241;7.77e-14;3!UBERON:0003057;7.77e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.77e-14!115;UBERON:0000481!4.02e-09!347;UBERON:0000924!1.62e-08!173;UBERON:0006601!1.62e-08!173;UBERON:0004121!4.22e-08!169;UBERON:0002346!4.98e-08!90;UBERON:0000477!8.59e-08!286;UBERON:0003075!1.34e-07!86;UBERON:0007284!1.34e-07!86;UBERON:0000475!1.46e-07!365;UBERON:0003103!2.24e-07!69;UBERON:0004111!2.69e-07!241;UBERON:0000483!3.69e-07!309;UBERON:0000468!4.60e-07!659;UBERON:0000119!6.88e-07!312;UBERON:0000153!9.12e-07!129;UBERON:0007811!9.12e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;7.77e-14;3!UBERON:0005174;7.77e-14;3!UBERON:0001137;7.77e-14;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,4.70e-14,3;UBERON:0005174,4.70e-14,3;UBERON:0001137,4.70e-14,3 | |||
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| ||
|short_description=p3@SHC4 | |||
}} | }} |
Latest revision as of 22:19, 17 September 2015
Short description: | p3@SHC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHC4_5end |
Coexpression cluster: | C2337_astrocytoma_Chondrocyte_Melanocyte_Mast_testis_leiomyoblastoma_tridermal |
Association with transcript: | 287bp_to_ENST00000332408, NM_203349, uc001zxb.1_5end |
EntrezGene: | SHC4 |
HGNC: | 16743 |
UniProt: | Q6S5L8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.71e-21 | 10 |
melanoblast | 1.71e-21 | 10 |
pigment cell | 1.69e-19 | 14 |
light melanocyte | 1.75e-14 | 3 |
neurecto-epithelial cell | 2.97e-10 | 20 |
columnar/cuboidal epithelial cell | 1.79e-09 | 27 |
migratory neural crest cell | 5.49e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 4.70e-14 | 3 |
dorsal region element | 4.70e-14 | 3 |
dorsum | 4.70e-14 | 3 |