FFCP PHASE1:Hg19::chr11:392625..392628,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11187 | |EntrezGene=11187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9025 | |HGNC=9025 | ||
|TSSclassifier=strong | |||
|UniProt=E9PQ15 | |UniProt=E9PQ15 | ||
|association_with_transcript=11bp_to_ENST00000534401_5end | |association_with_transcript=11bp_to_ENST00000534401_5end | ||
|cluster_id=chr11:392625..392628,+ | |||
|coexpression_cluster_id=C2129 | |coexpression_cluster_id=C2129 | ||
|description=CAGE_peak_13_at_PKP3_5end | |description=CAGE_peak_13_at_PKP3_5end | ||
|id=chr11:392625..392628,+ | |id=chr11:392625..392628,+ | ||
|ontology_enrichment_celltype=CL:0002577;1.73e-50;3!CL:0002621;4.75e-50;3!CL:0000349;2.45e-14;19!CL:0000312;3.36e-14;5!CL:0000240;5.37e-12;6!CL:0000311;5.37e-12;6!CL:0000079;5.37e-12;6!CL:0000237;5.37e-12;6!CL:0002159;2.67e-11;14!CL:0000575;1.07e-09;2!CL:0002536;1.64e-09;2!CL:0000362;2.65e-08;9!CL:0002251;4.41e-08;20 | |ontology_enrichment_celltype=CL:0002159!4.44e-20!13;CL:0000349!3.32e-18!3;CL:0002577!3.32e-18!3;CL:0002621!6.18e-18!3;CL:0000240!1.15e-14!6;CL:0000311!1.15e-14!6;CL:0000079!1.15e-14!6;CL:0000237!1.15e-14!6;CL:0000036!1.15e-14!6;CL:0000357!1.15e-14!6;CL:0000114!1.15e-14!6;CL:0000575!2.27e-12!2;CL:0002536!2.40e-12!2;CL:0002251!8.96e-12!21;CL:0000066!4.01e-11!254;CL:0000312!1.52e-10!5;CL:0002537!2.24e-10!5;CL:0002077!1.77e-09!33;CL:0000076!1.58e-08!62;CL:0002166!2.95e-08!3;CL:0002076!7.61e-07!43;CL:0000362!9.46e-07!8 | ||
| | |ontology_enrichment_celltype_v019=CL:0002577;1.73e-50;3!CL:0002621;4.75e-50;3!CL:0000349;2.45e-14;19!CL:0000312;3.36e-14;5!CL:0000240;5.37e-12;6!CL:0000311;5.37e-12;6!CL:0000079;5.37e-12;6!CL:0000237;5.37e-12;6!CL:0002159;2.67e-11;14!CL:0000575;1.07e-09;2!CL:0002536;1.64e-09;2!CL:0000362;2.65e-08;9!CL:0002251;4.41e-08;20 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0002577,1.14e-50,3;CL:0002621,7.24e-50,3;CL:0000349,2.13e-14,19;CL:0000312,3.60e-14,5;CL:0000240,5.68e-12,6;CL:0000311,5.68e-12,6;CL:0000079,5.68e-12,6;CL:0000237,5.68e-12,6;CL:0000036,5.68e-12,6;CL:0000357,5.68e-12,6;CL:0000114,5.68e-12,6;CL:0002159,2.82e-11,14;CL:0000575,1.12e-09,2;CL:0002536,1.44e-09,2;CL:0000362,2.75e-08,9;CL:0002251,4.68e-08,20;CL:0000066,5.15e-07,253 | ||
|ontology_enrichment_uberon=UBERON:0001949;4.75e-50;3!UBERON:0001987;4.32e-38;4!UBERON:0003929;6.33e-22;7!UBERON:0003350;2.82e-19;8!UBERON:0001828;2.82e-19;8!UBERON:0010371;7.35e-14;31!UBERON:0000486;4.45e-13;12!UBERON:0003729;4.03e-12;13!UBERON:0000478;2.02e-11;24!UBERON:0000165;9.02e-10;28!UBERON:0000161;1.77e-08;19!UBERON:0000166;1.77e-08;19!UBERON:0000344;4.41e-08;20!UBERON:0004807;2.14e-07;22!UBERON:0001723;9.37e-07;3!UBERON:0001033;9.37e-07;3 | |ontology_enrichment_development_v019=CL:0000357;5.37e-12;6!CL:0000114;5.37e-12;6 | ||
|ontology_enrichment_disease=DOID:1749!1.75e-09!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.34e-24!14;UBERON:0000158!1.34e-24!14;UBERON:0000305!1.31e-19!7;UBERON:0001949!6.18e-18!3;UBERON:0001723!3.48e-17!3;UBERON:0001033!3.48e-17!3;UBERON:0010056!3.48e-17!3;UBERON:0004871!3.90e-17!8;UBERON:0000166!1.43e-15!21;UBERON:0000165!3.00e-14!28;UBERON:0000930!3.00e-14!28;UBERON:0000478!7.81e-14!24;UBERON:0001987!8.80e-14!4;UBERON:0004340!8.80e-14!4;UBERON:0004923!1.89e-13!57;UBERON:0001444!1.06e-11!48;UBERON:0000161!3.78e-11!35;UBERON:0000344!1.31e-10!12;UBERON:0003729!6.62e-10!5;UBERON:0003102!9.44e-10!95;UBERON:0004121!1.83e-09!169;UBERON:0000924!3.79e-09!173;UBERON:0006601!3.79e-09!173;UBERON:0001042!7.24e-09!10;UBERON:0009145!7.24e-09!10;UBERON:0006562!4.55e-08!11;UBERON:0003124!4.63e-08!7;UBERON:0003100!1.90e-07!41;UBERON:0004175!1.91e-07!25;UBERON:0000064!2.52e-07!219;UBERON:0001828!5.29e-07!8;UBERON:0000997!8.27e-07!1;UBERON:0005056!8.27e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;4.75e-50;3!UBERON:0001987;4.32e-38;4!UBERON:0003929;6.33e-22;7!UBERON:0003350;2.82e-19;8!UBERON:0001828;2.82e-19;8!UBERON:0010371;7.35e-14;31!UBERON:0000486;4.45e-13;12!UBERON:0003729;4.03e-12;13!UBERON:0000478;2.02e-11;24!UBERON:0000165;9.02e-10;28!UBERON:0000161;1.77e-08;19!UBERON:0000166;1.77e-08;19!UBERON:0000344;4.41e-08;20!UBERON:0004807;2.14e-07;22!UBERON:0001723;9.37e-07;3!UBERON:0001033;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,7.24e-50,3;UBERON:0001987,3.16e-38,4;UBERON:0004340,3.16e-38,4;UBERON:0003124,3.45e-22,7;UBERON:0005631,2.11e-19,14;UBERON:0000158,2.11e-19,14;UBERON:0003350,3.29e-19,8;UBERON:0001828,3.29e-19,8;UBERON:0000166,2.51e-12,22;UBERON:0003729,4.43e-12,13;UBERON:0004923,5.86e-12,66;UBERON:0000478,1.81e-11,24;UBERON:0000165,2.00e-09,29;UBERON:0000930,2.00e-09,29;UBERON:0001444,1.76e-08,49;UBERON:0000344,4.68e-08,20;UBERON:0000995,8.27e-08,21;UBERON:0003102,8.98e-08,99;UBERON:0000161,1.21e-07,36;UBERON:0005795,1.77e-07,22;UBERON:0003975,1.77e-07,22;UBERON:0000033,2.03e-07,56;UBERON:0001723,9.12e-07,3;UBERON:0001033,9.12e-07,3;UBERON:0010056,9.12e-07,3 | |||
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|short_description=p13@PKP3 | |short_description=p13@PKP3 | ||
}} | }} |
Latest revision as of 22:42, 17 September 2015
Short description: | p13@PKP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_PKP3_5end |
Coexpression cluster: | C2129_Placental_amniotic_Keratinocyte_Corneal_Gingival_Mammary_tongue |
Association with transcript: | 11bp_to_ENST00000534401_5end |
EntrezGene: | PKP3 |
HGNC: | 9025 |
UniProt: | E9PQ15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 1.14e-50 | 3 |
gingival epithelial cell | 7.24e-50 | 3 |
extraembryonic cell | 2.13e-14 | 19 |
keratinocyte | 3.60e-14 | 5 |
stratified squamous epithelial cell | 5.68e-12 | 6 |
keratin accumulating cell | 5.68e-12 | 6 |
stratified epithelial cell | 5.68e-12 | 6 |
keratinizing barrier epithelial cell | 5.68e-12 | 6 |
epithelial fate stem cell | 5.68e-12 | 6 |
stratified epithelial stem cell | 5.68e-12 | 6 |
surface ectodermal cell | 5.68e-12 | 6 |
general ecto-epithelial cell | 2.82e-11 | 14 |
corneal epithelial cell | 1.12e-09 | 2 |
amniotic epithelial cell | 1.44e-09 | 2 |
epidermal cell | 2.75e-08 | 9 |
epithelial cell of alimentary canal | 4.68e-08 | 20 |
epithelial cell | 5.15e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 7.24e-50 | 3 |
placenta | 3.16e-38 | 4 |
allantois | 3.16e-38 | 4 |
chorion | 3.45e-22 | 7 |
extraembryonic membrane | 2.11e-19 | 14 |
membranous layer | 2.11e-19 | 14 |
epithelium of mucosa | 3.29e-19 | 8 |
gingiva | 3.29e-19 | 8 |
oral opening | 2.51e-12 | 22 |
mouth mucosa | 4.43e-12 | 13 |
organ component layer | 5.86e-12 | 66 |
extraembryonic structure | 1.81e-11 | 24 |
mouth | 2.00e-09 | 29 |
stomodeum | 2.00e-09 | 29 |
subdivision of head | 1.76e-08 | 49 |
mucosa | 4.68e-08 | 20 |
uterus | 8.27e-08 | 21 |
surface structure | 8.98e-08 | 99 |
orifice | 1.21e-07 | 36 |
embryonic uterus | 1.77e-07 | 22 |
internal female genitalia | 1.77e-07 | 22 |
head | 2.03e-07 | 56 |
tongue | 9.12e-07 | 3 |
gustatory system | 9.12e-07 | 3 |
future tongue | 9.12e-07 | 3 |