FFCP PHASE1:Hg19::chr2:65216084..65216102,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6509 | |EntrezGene=6509 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10942 | |HGNC=10942 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-353bp_to_uc010fcv.2,uc010yqa.1_5end | |association_with_transcript=-353bp_to_uc010fcv.2,uc010yqa.1_5end | ||
|cluster_id=chr2:65216084..65216102,+ | |||
|description=CAGE_peak_6_at_SLC1A4_5end | |description=CAGE_peak_6_at_SLC1A4_5end | ||
|id=chr2:65216084..65216102,+ | |id=chr2:65216084..65216102,+ | ||
|ontology_enrichment_celltype=CL:0000148!9.65e-07!10;CL:0000541!9.65e-07!10 | |ontology_enrichment_celltype=CL:0000148!9.65e-07!10;CL:0000541!9.65e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.48e-20;10!CL:0002567;3.11e-18;3!CL:0000147;3.00e-14;14!CL:0000710;8.69e-10;20!CL:0000075;4.37e-07;27!CL:0002566;4.54e-07;1 | |ontology_enrichment_celltype_v019=CL:0000148;3.48e-20;10!CL:0002567;3.11e-18;3!CL:0000147;3.00e-14;14!CL:0000710;8.69e-10;20!CL:0000075;4.37e-07;27!CL:0002566;4.54e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.03e-20,10;CL:0000541,3.03e-20,10;CL:0002567,2.80e-18,3;CL:0000147,2.72e-14,14;CL:0000710,8.13e-10,20;CL:0000075,4.17e-07,27;CL:0002566,4.18e-07,1 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:3371,5.57e-07,1;DOID:4549,5.57e-07,1;DOID:5861,5.57e-07,1;DOID:6496,5.57e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.87e-15!94;UBERON:0001016!1.87e-15!94;UBERON:0001017!2.95e-15!82;UBERON:0005743!3.44e-15!86;UBERON:0002616!5.58e-15!59;UBERON:0000955!9.24e-15!69;UBERON:0006238!9.24e-15!69;UBERON:0001049!1.12e-14!57;UBERON:0005068!1.12e-14!57;UBERON:0006241!1.12e-14!57;UBERON:0007135!1.12e-14!57;UBERON:0002346!4.98e-12!90;UBERON:0003080!6.70e-12!42;UBERON:0003075!1.32e-11!86;UBERON:0007284!1.32e-11!86;UBERON:0001893!2.57e-11!34;UBERON:0002780!3.03e-11!41;UBERON:0001890!3.03e-11!41;UBERON:0006240!3.03e-11!41;UBERON:0002791!6.93e-11!33;UBERON:0001869!1.05e-10!32;UBERON:0002020!2.95e-10!34;UBERON:0003528!2.95e-10!34;UBERON:0002619!1.12e-08!22;UBERON:0003056!1.84e-08!61;UBERON:0000956!2.27e-08!25;UBERON:0000203!2.27e-08!25;UBERON:0000033!2.74e-08!123;UBERON:0000153!2.91e-08!129;UBERON:0007811!2.91e-08!129;UBERON:0000924!9.19e-08!173;UBERON:0006601!9.19e-08!173;UBERON:0004121!2.20e-07!169;UBERON:0001950!2.65e-07!20;UBERON:0007023!4.37e-07!115 | |ontology_enrichment_uberon=UBERON:0000073!1.87e-15!94;UBERON:0001016!1.87e-15!94;UBERON:0001017!2.95e-15!82;UBERON:0005743!3.44e-15!86;UBERON:0002616!5.58e-15!59;UBERON:0000955!9.24e-15!69;UBERON:0006238!9.24e-15!69;UBERON:0001049!1.12e-14!57;UBERON:0005068!1.12e-14!57;UBERON:0006241!1.12e-14!57;UBERON:0007135!1.12e-14!57;UBERON:0002346!4.98e-12!90;UBERON:0003080!6.70e-12!42;UBERON:0003075!1.32e-11!86;UBERON:0007284!1.32e-11!86;UBERON:0001893!2.57e-11!34;UBERON:0002780!3.03e-11!41;UBERON:0001890!3.03e-11!41;UBERON:0006240!3.03e-11!41;UBERON:0002791!6.93e-11!33;UBERON:0001869!1.05e-10!32;UBERON:0002020!2.95e-10!34;UBERON:0003528!2.95e-10!34;UBERON:0002619!1.12e-08!22;UBERON:0003056!1.84e-08!61;UBERON:0000956!2.27e-08!25;UBERON:0000203!2.27e-08!25;UBERON:0000033!2.74e-08!123;UBERON:0000153!2.91e-08!129;UBERON:0007811!2.91e-08!129;UBERON:0000924!9.19e-08!173;UBERON:0006601!9.19e-08!173;UBERON:0004121!2.20e-07!169;UBERON:0001950!2.65e-07!20;UBERON:0007023!4.37e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001954;1.01e-11;2!UBERON:0003022;1.01e-11;2!UBERON:0002421;1.01e-11;2!UBERON:0002600;1.01e-11;2 | |ontology_enrichment_uberon_v019=UBERON:0001954;1.01e-11;2!UBERON:0003022;1.01e-11;2!UBERON:0002421;1.01e-11;2!UBERON:0002600;1.01e-11;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,5.23e-12,2;UBERON:0003022,5.23e-12,2;UBERON:0002421,5.23e-12,2;UBERON:0002600,5.23e-12,2;UBERON:0003112,9.79e-07,1;UBERON:0011158,9.79e-07,1;UBERON:0003128,9.79e-07,1;UBERON:0001703,9.79e-07,1;UBERON:0002241,9.79e-07,1;UBERON:0004761,9.79e-07,1;UBERON:0009617,9.79e-07,1 | |||
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| ||
|short_description=p6@SLC1A4 | |short_description=p6@SLC1A4 | ||
}} | }} |
Latest revision as of 00:17, 18 September 2015
Short description: | p6@SLC1A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SLC1A4_5end |
Coexpression cluster: | NA |
Association with transcript: | -353bp_to_uc010fcv.2, uc010yqa.1_5end |
EntrezGene: | SLC1A4 |
HGNC: | 10942 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.03e-20 | 10 |
melanoblast | 3.03e-20 | 10 |
light melanocyte | 2.80e-18 | 3 |
pigment cell | 2.72e-14 | 14 |
neurecto-epithelial cell | 8.13e-10 | 20 |
columnar/cuboidal epithelial cell | 4.17e-07 | 27 |
dark melanocyte | 4.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 5.23e-12 | 2 |
lobe parts of cerebral cortex | 5.23e-12 | 2 |
hippocampal formation | 5.23e-12 | 2 |
limbic lobe | 5.23e-12 | 2 |
olfactory region | 9.79e-07 | 1 |
primary subdivision of skull | 9.79e-07 | 1 |
cranium | 9.79e-07 | 1 |
neurocranium | 9.79e-07 | 1 |
chondrocranium | 9.79e-07 | 1 |
cartilaginous neurocranium | 9.79e-07 | 1 |
head paraxial mesoderm | 9.79e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 5.57e-07 | 1 |
extraosseous chondrosarcoma | 5.57e-07 | 1 |
myxoid chondrosarcoma | 5.57e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 5.57e-07 | 1 |