FFCP PHASE1:Hg19::chr12:2800313..2800332,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=40119 | |HGNC=40119 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000541673_5end | |association_with_transcript=0bp_to_ENST00000541673_5end | ||
|cluster_id=chr12:2800313..2800332,- | |||
|coexpression_cluster_id=C3275 | |||
|description=CAGE_peak_1_at_CACNA1C-AS1_5end | |description=CAGE_peak_1_at_CACNA1C-AS1_5end | ||
|id=chr12:2800313..2800332,- | |id=chr12:2800313..2800332,- | ||
|ontology_enrichment_celltype=CL:0000791!2.72e-22!18;CL:0000789!2.72e-22!18;CL:0002420!2.72e-22!18;CL:0002419!2.72e-22!18;CL:0000790!2.72e-22!18;CL:0000084!3.85e-18!25;CL:0000827!3.85e-18!25;CL:0000542!5.30e-17!53;CL:0000051!5.30e-17!53;CL:0000037!7.99e-17!172;CL:0000566!7.99e-17!172;CL:0000988!1.14e-16!182;CL:0000838!2.78e-16!52;CL:0000625!4.76e-15!11;CL:0002032!2.90e-14!165;CL:0000837!2.90e-14!165;CL:0000738!7.87e-09!140;CL:0000624!2.71e-08!6;CL:0002087!3.38e-07!119;CL:0002031!4.13e-07!124 | |ontology_enrichment_celltype=CL:0000791!2.72e-22!18;CL:0000789!2.72e-22!18;CL:0002420!2.72e-22!18;CL:0002419!2.72e-22!18;CL:0000790!2.72e-22!18;CL:0000084!3.85e-18!25;CL:0000827!3.85e-18!25;CL:0000542!5.30e-17!53;CL:0000051!5.30e-17!53;CL:0000037!7.99e-17!172;CL:0000566!7.99e-17!172;CL:0000988!1.14e-16!182;CL:0000838!2.78e-16!52;CL:0000625!4.76e-15!11;CL:0002032!2.90e-14!165;CL:0000837!2.90e-14!165;CL:0000738!7.87e-09!140;CL:0000624!2.71e-08!6;CL:0002087!3.38e-07!119;CL:0002031!4.13e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000791;6.11e-40;18!CL:0000789;6.11e-40;18!CL:0002419;6.11e-40;18!CL:0000625;1.55e-32;11!CL:0000084;1.69e-31;25!CL:0000542;1.08e-12;53!CL:0000624;4.49e-12;6!CL:0000623;5.45e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.35e-40,18;CL:0000789,3.35e-40,18;CL:0002420,3.35e-40,18;CL:0002419,3.35e-40,18;CL:0000790,3.35e-40,18;CL:0000625,1.47e-32,11;CL:0000084,1.03e-31,25;CL:0000827,1.03e-31,25;CL:0000838,2.47e-22,52;CL:0000542,8.40e-22,53;CL:0000051,8.40e-22,53;CL:0000037,4.68e-20,168;CL:0000988,1.63e-18,177;CL:0002032,2.10e-17,161;CL:0000837,2.10e-17,161;CL:0000624,2.71e-12,6;CL:0000623,6.49e-09,3;CL:0000825,6.49e-09,3;CL:0002087,7.63e-08,115;CL:0000738,2.11e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;6.11e-40;18!CL:0000051;1.08e-12;53 | |||
|ontology_enrichment_disease=DOID:1240!7.66e-08!39;DOID:8692!9.76e-07!31 | |ontology_enrichment_disease=DOID:1240!7.66e-08!39;DOID:8692!9.76e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;8.41e-16;31!DOID:1240;2.45e-11;39!DOID:2531;2.19e-09;51!DOID:0060083;2.19e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,3.13e-16,31;DOID:1240,2.87e-14,39;DOID:2531,1.02e-11,51;DOID:0060083,1.02e-11,51 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.46e-11!15;UBERON:0000179!3.46e-11!15;UBERON:0000463!3.46e-11!15;UBERON:0007023!2.71e-07!115 | |ontology_enrichment_uberon=UBERON:0000178!3.46e-11!15;UBERON:0000179!3.46e-11!15;UBERON:0000463!3.46e-11!15;UBERON:0007023!2.71e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.79e-08;2!UBERON:0005058;6.79e-08;2!UBERON:0009113;6.79e-08;2!UBERON:0002390;6.22e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.53e-08,4;UBERON:0005058,5.53e-08,4;UBERON:0009113,5.53e-08,4;UBERON:0003295,5.53e-08,4;UBERON:0005562,5.53e-08,4 | |||
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| ||
|short_description=p1@CACNA1C-AS1 | |short_description=p1@CACNA1C-AS1 | ||
}} | }} |
Latest revision as of 00:33, 18 September 2015
Short description: | p1@CACNA1C-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CACNA1C-AS1_5end |
Coexpression cluster: | C3275_Hodgkin_acute_thymus_CD34_CD133_granulocyte_CD4 |
Association with transcript: | 0bp_to_ENST00000541673_5end |
EntrezGene: | NA |
HGNC: | 40119 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.35e-40 | 18 |
alpha-beta T cell | 3.35e-40 | 18 |
immature T cell | 3.35e-40 | 18 |
mature T cell | 3.35e-40 | 18 |
immature alpha-beta T cell | 3.35e-40 | 18 |
CD8-positive, alpha-beta T cell | 1.47e-32 | 11 |
T cell | 1.03e-31 | 25 |
pro-T cell | 1.03e-31 | 25 |
lymphoid lineage restricted progenitor cell | 2.47e-22 | 52 |
lymphocyte | 8.40e-22 | 53 |
common lymphoid progenitor | 8.40e-22 | 53 |
hematopoietic stem cell | 4.68e-20 | 168 |
hematopoietic cell | 1.63e-18 | 177 |
hematopoietic oligopotent progenitor cell | 2.10e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.10e-17 | 161 |
CD4-positive, alpha-beta T cell | 2.71e-12 | 6 |
natural killer cell | 6.49e-09 | 3 |
pro-NK cell | 6.49e-09 | 3 |
nongranular leukocyte | 7.63e-08 | 115 |
leukocyte | 2.11e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 5.53e-08 | 4 |
hemolymphoid system gland | 5.53e-08 | 4 |
thymic region | 5.53e-08 | 4 |
pharyngeal gland | 5.53e-08 | 4 |
thymus primordium | 5.53e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.13e-16 | 31 |
leukemia | 2.87e-14 | 39 |
hematologic cancer | 1.02e-11 | 51 |
immune system cancer | 1.02e-11 | 51 |