FFCP PHASE1:Hg19::chr1:160312998..160313024,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1314 | |EntrezGene=1314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2230 | |HGNC=2230 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_ENST00000368069_5end | |association_with_transcript=13bp_to_ENST00000368069_5end | ||
|cluster_id=chr1:160312998..160313024,- | |||
|coexpression_cluster_id=C1465 | |||
|description=CAGE_peak_2_at_COPA_5end | |description=CAGE_peak_2_at_COPA_5end | ||
|id=chr1:160312998..160313024,- | |id=chr1:160312998..160313024,- | ||
|ontology_enrichment_celltype=CL:0000055!8.62e-24!180;CL:0000048!4.22e-19!430;CL:0000144!1.62e-18!625;CL:0000723!1.64e-18!436;CL:0000034!4.47e-18!444;CL:0000012!6.26e-18!682;CL:0000548!1.06e-17!679;CL:0000004!1.06e-17!679;CL:0000255!1.06e-17!679;CL:0000680!9.76e-17!57;CL:0000056!9.76e-17!57;CL:0000355!9.76e-17!57;CL:0002371!2.14e-16!591;CL:0000187!1.63e-15!54;CL:0000359!5.40e-15!32;CL:0000192!2.38e-14!42;CL:0000514!2.38e-14!42;CL:0000222!1.48e-13!119;CL:0000057!3.68e-13!75;CL:0000183!1.35e-12!59;CL:0000393!2.20e-12!60;CL:0000211!2.20e-12!60;CL:0000003!1.08e-09!722;CL:0002320!9.82e-08!365;CL:0002620!1.61e-07!23;CL:0000134!2.72e-07!358 | |ontology_enrichment_celltype=CL:0000055!8.62e-24!180;CL:0000048!4.22e-19!430;CL:0000144!1.62e-18!625;CL:0000723!1.64e-18!436;CL:0000034!4.47e-18!444;CL:0000012!6.26e-18!682;CL:0000548!1.06e-17!679;CL:0000004!1.06e-17!679;CL:0000255!1.06e-17!679;CL:0000680!9.76e-17!57;CL:0000056!9.76e-17!57;CL:0000355!9.76e-17!57;CL:0002371!2.14e-16!591;CL:0000187!1.63e-15!54;CL:0000359!5.40e-15!32;CL:0000192!2.38e-14!42;CL:0000514!2.38e-14!42;CL:0000222!1.48e-13!119;CL:0000057!3.68e-13!75;CL:0000183!1.35e-12!59;CL:0000393!2.20e-12!60;CL:0000211!2.20e-12!60;CL:0000003!1.08e-09!722;CL:0002320!9.82e-08!365;CL:0002620!1.61e-07!23;CL:0000134!2.72e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000359;3.48e-14;32!CL:0000192;1.84e-10;43!CL:0000187;2.17e-08;55!CL:0000860;7.60e-08;33!CL:0002057;7.60e-08;33!CL:0002620;1.32e-07;23!CL:0000393;5.00e-07;61!CL:0000211;5.00e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,4.76e-19,427;CL:0000723,1.86e-18,433;CL:0000034,5.10e-18,441;CL:0000680,1.14e-16,58;CL:0000056,1.14e-16,58;CL:0000355,1.14e-16,58;CL:0000187,1.89e-15,55;CL:0000359,5.40e-15,32;CL:0000192,2.96e-14,43;CL:0000514,2.96e-14,43;CL:0000057,2.06e-13,76;CL:0000222,2.23e-13,121;CL:0000393,2.29e-12,61;CL:0000211,2.29e-12,61;CL:0002320,1.16e-07,361;CL:0002620,1.61e-07,23;CL:0000134,3.19e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000514;1.84e-10;43!CL:0000355;9.48e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.02e-17!83;UBERON:0002329!2.02e-17!83;UBERON:0003077!2.02e-17!83;UBERON:0003059!2.02e-17!83;UBERON:0007282!2.02e-17!83;UBERON:0009618!2.02e-17!83;UBERON:0007285!2.02e-17!83;UBERON:0002049!2.59e-17!79;UBERON:0007798!2.59e-17!79;UBERON:0001637!6.55e-17!42;UBERON:0003509!6.55e-17!42;UBERON:0004572!6.55e-17!42;UBERON:0004872!8.82e-17!84;UBERON:0001981!1.65e-15!60;UBERON:0007500!1.65e-15!60;UBERON:0004537!1.65e-15!60;UBERON:0006965!1.65e-15!60;UBERON:0004290!3.76e-15!70;UBERON:0000055!1.11e-14!69;UBERON:0002204!2.40e-14!167;UBERON:0001134!4.66e-14!61;UBERON:0002036!4.66e-14!61;UBERON:0003082!4.66e-14!61;UBERON:0002385!8.44e-14!63;UBERON:0001015!8.44e-14!63;UBERON:0000383!8.44e-14!63;UBERON:0004535!2.06e-13!110;UBERON:0000486!2.86e-13!82;UBERON:0004573!3.52e-13!33;UBERON:0004571!3.52e-13!33;UBERON:0000490!3.72e-12!138;UBERON:0001009!4.69e-12!113;UBERON:0003914!6.90e-09!118;UBERON:0000926!8.61e-09!448;UBERON:0004120!8.61e-09!448;UBERON:0006603!8.61e-09!448;UBERON:0000468!1.63e-08!659;UBERON:0000480!5.15e-08!626;UBERON:0000467!6.88e-08!625;UBERON:0000947!1.31e-07!21;UBERON:0010191!1.31e-07!21;UBERON:0005256!1.43e-07!143;UBERON:0002199!2.04e-07!45;UBERON:0002416!2.04e-07!45;UBERON:0002384!3.39e-07!375;UBERON:0002097!8.92e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.73e-12;42!UBERON:0003509;2.73e-12;42!UBERON:0004572;2.73e-12;42!UBERON:0004573;6.02e-12;33!UBERON:0004571;6.02e-12;33!UBERON:0007500;7.29e-10;56!UBERON:0001981;7.29e-10;56!UBERON:0004537;7.29e-10;56!UBERON:0002049;2.19e-08;75!UBERON:0007798;2.19e-08;75!UBERON:0000055;7.99e-08;65!UBERON:0000947;1.43e-07;21!UBERON:0010191;1.43e-07;21 | |||
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| ||
|short_description=p2@COPA | |short_description=p2@COPA | ||
}} | }} |
Latest revision as of 02:04, 18 September 2015
Short description: | p2@COPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COPA_5end |
Coexpression cluster: | C1465_Mast_Preadipocyte_Fibroblast_Smooth_Chondrocyte_basal_Osteoblast |
Association with transcript: | 13bp_to_ENST00000368069_5end |
EntrezGene: | COPA |
HGNC: | 2230 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 4.76e-19 | 427 |
somatic stem cell | 1.86e-18 | 433 |
stem cell | 5.10e-18 | 441 |
muscle precursor cell | 1.14e-16 | 58 |
myoblast | 1.14e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.14e-16 | 58 |
muscle cell | 1.89e-15 | 55 |
vascular associated smooth muscle cell | 5.40e-15 | 32 |
smooth muscle cell | 2.96e-14 | 43 |
smooth muscle myoblast | 2.96e-14 | 43 |
fibroblast | 2.06e-13 | 76 |
mesodermal cell | 2.23e-13 | 121 |
electrically responsive cell | 2.29e-12 | 61 |
electrically active cell | 2.29e-12 | 61 |
connective tissue cell | 1.16e-07 | 361 |
skin fibroblast | 1.61e-07 | 23 |
mesenchymal cell | 3.19e-07 | 354 |