FFCP PHASE1:Hg19::chr1:42501569..42501614,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=59269 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13561 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000489103,NR_038261,uc001chb.1_5end | |||
|cluster_id=chr1:42501569..42501614,- | |||
|description=CAGE_peak_1_at_HIVEP3_5end | |||
|id=chr1:42501569..42501614,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.95e-17!82;UBERON:0000955!2.81e-17!69;UBERON:0006238!2.81e-17!69;UBERON:0005743!1.34e-16!86;UBERON:0001049!4.04e-15!57;UBERON:0005068!4.04e-15!57;UBERON:0006241!4.04e-15!57;UBERON:0007135!4.04e-15!57;UBERON:0002616!1.09e-14!59;UBERON:0003075!1.66e-14!86;UBERON:0007284!1.66e-14!86;UBERON:0007023!4.10e-14!115;UBERON:0000073!3.33e-13!94;UBERON:0001016!3.33e-13!94;UBERON:0000025!1.32e-12!194;UBERON:0002346!2.79e-12!90;UBERON:0003080!8.01e-12!42;UBERON:0002780!2.41e-11!41;UBERON:0001890!2.41e-11!41;UBERON:0006240!2.41e-11!41;UBERON:0001893!7.48e-10!34;UBERON:0004111!8.61e-10!241;UBERON:0002020!9.44e-10!34;UBERON:0003528!9.44e-10!34;UBERON:0003056!1.58e-09!61;UBERON:0002791!1.76e-09!33;UBERON:0000477!2.61e-09!286;UBERON:0001869!2.89e-09!32;UBERON:0000956!2.69e-08!25;UBERON:0000203!2.69e-08!25;UBERON:0000153!7.81e-08!129;UBERON:0007811!7.81e-08!129;UBERON:0000119!2.14e-07!312;UBERON:0000033!2.92e-07!123;UBERON:0000483!4.55e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;9.71e-09;53!UBERON:0002616;9.71e-09;53!UBERON:0002780;9.83e-09;41!UBERON:0001890;9.83e-09;41!UBERON:0000956;1.03e-08;25!UBERON:0000203;1.03e-08;25!UBERON:0001893;1.74e-08;34!UBERON:0003528;2.10e-08;34!UBERON:0002020;2.10e-08;34!UBERON:0001869;2.71e-08;32!UBERON:0002791;4.77e-08;32!UBERON:0000955;1.55e-07;68!UBERON:0002619;6.65e-07;22!UBERON:0001017;7.63e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.07e-18,81;UBERON:0000955,2.90e-17,68;UBERON:0006238,2.90e-17,68;UBERON:0001049,3.37e-15,56;UBERON:0005068,3.37e-15,56;UBERON:0006241,3.37e-15,56;UBERON:0007135,3.37e-15,56;UBERON:0001016,9.70e-15,89;UBERON:0000025,1.00e-14,192;UBERON:0000073,2.45e-14,53;UBERON:0002616,2.45e-14,53;UBERON:0003075,7.09e-14,82;UBERON:0007284,7.09e-14,82;UBERON:0002346,4.34e-12,86;UBERON:0002780,7.84e-12,41;UBERON:0001890,7.84e-12,41;UBERON:0003080,7.84e-12,41;UBERON:0006240,7.84e-12,41;UBERON:0007023,3.42e-11,114;UBERON:0010314,2.01e-10,132;UBERON:0001893,3.94e-10,34;UBERON:0003528,5.08e-10,34;UBERON:0002020,5.08e-10,34;UBERON:0004111,6.52e-10,240;UBERON:0003056,9.62e-10,61;UBERON:0001869,1.80e-09,32;UBERON:0002791,2.82e-09,32;UBERON:0000956,9.16e-09,25;UBERON:0000203,9.16e-09,25;UBERON:0010371,1.03e-08,104;UBERON:0000119,4.57e-07,309;UBERON:0002619,5.58e-07,22 | |||
|phase1_expression=0.363356758541113,0.642301571672949,1.12763523276777,0,0,0.872338524100369,2.53299878168311,0.631719873426831,3.13422753839806,3.44027511102112,0,0,1.05506791291381,0.123766352960047,0,0.672325146451775,1.80808358407193,1.46062018077475,1.95173119516203,0.861847406537515,1.02000345622126,1.88072832886853,7.44213566540748,7.11747010378998,4.3939923858181,6.80079311156766,6.07544361929599,5.19491156670283,1.18009283054671,3.0706351847777,0.928896739896456,0,0,0,0.92960640696362,2.13253848731132,2.05520307534393,4.9859586767869,7.01905566145496,8.89744569934992,0.223915474239924,0.647787332037959,0.77272670290256,1.16318591023652,0.377875943688809,1.4555043671269,1.62700325833979,0.822335776043652,0.929119112685311,1.1507695692886,1.2808035326455,0.709446689665756,0.344745680736619,1.29096936716765,2.70852973188684,0.564727018627814,0.545812300115692,0.449446968890169,0.612167784741805,0.962787081228281,0.639337125799041,0.659702600373432,0.398927315243264,0.852449501065388,1.16083695451434,0.56738522469114,0.622822248995575,1.00499466102697,1.5644487552606,0.65156653411535,1.81619850790011,0.736555271975129,0.632924774881769,0.633765858935825,2.12604299965044,1.67726916406701,1.01095768031846,0.901061357049038,0.964353520182481,1.42506371870624,1.59133341759272,1.46131323011707,0,0.546138611262131,0,2.56038133539904,0.400395987036012,0,0,0,1.70763890732835,2.93618594685469,1.14681968437569,6.60856642895129,3.36305137788922,0.526768169550154,2.16380747125216,7.8602152549833,5.96244347098577,0.83593247695339,4.23698946623668,6.15482147455153,0,0.891283655081389,1.17842362989935,1.99380505125259,1.89562704635511,2.81800903396485,2.60118695119756,2.79544437826249,0.829050053357545,1.44901542867526,1.18629250529648,2.40786745280742,1.04535523804977,2.60611488204402,3.44898444241729,5.49803912772208,1.51811815211702,2.54852331459277,1.30216690771284,1.90090408889675,1.35517607169996,1.53583933385302,3.74792179657038,2.36777252044017,3.28451198768419,6.65302252641617,10.9650480271238,6.08262496307756,0,2.68280343881454,1.53435074212236,0,0,0.434539556882471,0,1.94653948121054,4.44313640671119,5.32150553910154,3.51339142772504,2.68507104770311,0.364295288292542,0,0,0,0,5.00830311041218,4.57595928624102,4.08603251462521,0.39752481473341,3.4409383804245,0.694281003215189,0,2.51699661725944,1.37559020970034,1.04497483268405,1.03366703667732,0.35576626268671,0.33472061276467,0,0.760272105718513,1.70843440283719,0.367663080345869,0,1.07159673940896,1.34717623575702,0.900891843866578,0,0,1.09921046358244,0,3.87780264148325,0,0.496971951695318,2.15271869829786,1.58891016975863,1.72101972449288,1.77334191099179,0.560677600142307,2.1349799145941,1.97334038733728,1.8672662123986,0.538842688278752,1.63461903113459,0.908144565869588,1.72852777344,0.70296429550139,0.312160076830321,0.570471821544449,0,0,0.161872944368132,0,0.204154171254893,0.491337269247072,0.413303124703062,0,0.247266929278557,0,2.15585442544872,0.336672227908132,0.125118519871964,0.277064115484183,0,0.30648779579902,0.150238058906597,1.47461838108027,0.717558542755448,1.49490172172997,1.27159140695737,1.50045548042201,0.206105058476878,0.515281080091258,0.744467425326359,2.53164498361899,0.68205903612839,0.504867548488229,0.828449087780694,0,1.42003837006646,0.906768884048762,0.67824236924195,0.57978255948989,0.545492241181669,0.286804595389004,0,0,0,0.414644220061482,0.252320850875628,0,1.56449532329816,0,1.38134921352481,0.464367928031979,0,0,0.505754070234305,0.723033089650446,0.220587945464788,0.653638332277218,0.237270619111097,0.943819157121151,0.392442930250692,0.38474715694639,0,1.40241773803446,2.4694440679884,7.3504355692771,2.53510069643662,0,1.18157981336281,2.20731549707325,0,1.54411029268673,0.329250856225877,0,0.100528972411631,0.185176890317059,0,2.07986957055916,4.3299402607582,3.014190529352,1.05667824812239,0.577465791044295,0.925971025153221,0.190254152234598,0,0,0,0.234004265139238,0.297262324577456,0,0.335964256397719,0.425325291727159,0.358234090811393,0,2.30029607499127,0,0.880484340132261,0.621984346622316,0.144119953416961,0.37872730027914,0.253991577168676,0,0,1.71072446022705,0.719792448923265,0.300343057843917,0.285826432630578,1.45770409648969,3.05172048183296,1.6134422880609,3.49033632546,0,0.845302752556,0,0,1.28603687131071,0,0.266422179016099,1.57275793023962,0.542621605391443,1.64648067356154,0.65147236858747,0.710783897485092,0,6.33022691825131,4.35766729300147,7.49797433865428,0,0.502257091432126,0,0.239624855491583,0,1.42636905040718,0.289562613335158,0.410952645100767,0.358121926479791,0.336255431980582,11.0337225713079,10.9970063178354,9.24069861214188,5.33598710867173,1.30139853857622,3.86644406388848,2.68026024534958,5.10351001322531,1.49801404789436,2.99161459204025,1.24324654030811,0.36807447515742,0.500170521059677,0.271265023699736,0.623912584592421,0,0,0,0,0,1.03473071292505,0,0.921845842708516,0.434418072340414,0.391602314925481,1.37257369524342,3.92859249633486,4.09856981555372,9.07184241329277,0,0,0,0,0.767309866440312,0.561320188866147,0.384417447767103,1.02341449813341,1.44768529029247,0,1.69630663182921,1.77561725313127,1.47828880824856,3.63478100428535,0.929683027679674,0.120859449591622,0.802025881213139,0.276242966807689,0.68888668898764,0.910455840033585,0.917870904715969,4.51199612907412,1.84836809050595,4.70609861506113,2.92278449306521,2.84989398010764,0,1.02056223165909,2.15915916102139,3.08454505380579,2.43851793789468,3.01013864312912,1.27438136522519,1.66215201785745,5.59686886805446,0.219259876645935,0,0.512900250232778,0.328014645699706,0.650756789328606,1.13345112812495,0.183138929636687,0.247528499761764,0,0.650060246036521,1.6068392984416,1.16004861950546,0.462145851343933,0.15350367472613,0.413509717453592,0.644521469209642,0.580066775656914,0.511359764496605,0.890320356467374,0.165284915360978,0,0.765676274967505,0.10115778085555,0,0.94443704049192,0.6970372701606,1.23213432070436,4.25844824253617,3.47973196830029,1.8532421910392,0.286249773483982,1.86079184679834,1.89827654831236,2.09693213316207,0.767693373934002,0.42793898803392,2.54562598340749,0.78494864019923,0.719489830333259,3.0199073270966,1.53156123049392,3.43710218674637,3.17020642346017,1.68503382495592,2.43816869544795,2.19342140668156,3.16950440270266,0.409499734223957,0.707027159768564,1.13008116620243,1.10273068709225,1.99031692572366,0.438450885253763,1.15755106853338,0,1.42037263873893,3.40805847909725,3.94373843545138,0.143411352204052,1.17898849215745,2.49669736036875,0,1.05553817648832,0,0.379473173765715,0,0.577332676353072,0.670302275535787,0,1.60044461320525,0,1.68471475667626,0,0.459446800413919,0.507447609232169,0.764637207142375,0,0.714695326373367,1.64544909234478,0.648473311192717,1.08006287447623,4.75875105776562,0,3.84991942105343,1.22520107990516,0.371606350251437,0,1.13826949357463,1.11598390910176,0,4.78763425330917,0.211673582723883,0,1.12318871245384,0,0,2.50634477090067,1.86220955581764,0,0,0.425846237690326,0.343505344755765,0.307240764308458,0.223676107892416,0.834245708559542,0,0.278406173895242,0,0.270455678475983,0.33307196799782,0,0.18714054040822,2.19762268907841,1.45632626099416,1.33732061132974,1.42068073403207,0.47748896947538,0,0,0.994147647766298,2.2507106625682,3.22795244566427,0.988823245360557,0,0.796991953004279,2.76283915531148,0.755798243562828,2.76125442755818,1.96935688737711,0.311039587661807,2.3365771298305,0,2.55786185113436,1.28236427328014,4.7896618469388,1.11136990144637,1.93866549219044,1.57705766875147,3.99227596002388,2.86470537193757,2.71125999988207,4.34999745260876,1.93448862085349,0,0,2.41320361269025,0.291604613383254,0.347249989866585,1.77148277162768,1.92954301800653,3.05163472634166,4.64432891711143,3.84211904639612,0.658156191461918,0,1.25481369850743,1.07730361905316,2.39278317278703,0.23056390438806,0.359030577639089,0.217294743844016,1.91400695839152,0.549585560411174,2.13213910407454,3.06579894587209,0,0,0,0.19606253431774,0,0,0,1.26598838716816,0.163232808159148,0,0.432777279484182,0.995261931078505,0.442287822516696,1.83309043480088,0.593042257361244,0.247127877893006,0.730953646538188,3.43745778201453,1.60515529459758,1.63985112007737,0,3.52196314077761,4.61282721114776,4.73501283419269,1.20990716048664,8.26396456402323,2.96976924253893,0.60129367765797,1.14057010536972,2.65861549082874,1.65495977937749,1.2557316736289,1.19472429772959,0.569219092059585,2.91216813327591,0.347119476670262,0.979923974143776,1.04471047896483,1.92199335066233,0,0,0.0730893170861856,0,0.678923115418936,0.353024506766001,1.58186518546373,4.79646736263628,2.58328995213887,2.59574263419103,1.17330829640882,2.24444696704294,3.62870091056899,0.599428828746391,1.29681375438695,1.14536596165916,1.71594997861965,0,0.124252535565433,0,4.62074300650288,3.24268823568233,1.83596791745379,4.04530825862126,2.40168115483916,1.77976992559591,3.83239764200917,1.71906176567983,0.788662062837943,3.6306712165393,3.20824593616357,5.74298419661451,2.39614800598789,0.858452096273142,0.669514372325618,1.81395375714161,2.52209918479682,0,0,0.0824158583811665,0,0.196854963029498,2.2015066337104,1.59045937961861,2.58786471611994,0,0,0,0,0.77380195455795,3.82722206945555,10.7339100031765,1.49730843868477,1.83591058472493,2.11200673038813,0,0.191915197319445,2.85878130549347,1.98627591109629,0,0.542999601753713,0,1.63293680054705,1.19730191562487,0.492555124496034,1.70388021785422,4.75910784384528,0.732761168390412,2.65013777824443,3.49063982176186,2.51241943311111,0,0.704815022316672,3.84434685243701,1.72924735609633,4.55662960881915,0.992332043623902,1.58089305518355,0,0.638341257770182,4.89616023032527,6.7686271386129,3.06345576763462,2.95085367638824,0.157054096250234,1.77213635993397,1.70836770862748,3.1297732676625,1.14681839138014,2.3295100822739,2.91853093824502,2.07522952404346,4.37431427867373,1.97143852804142,0.570930667089935,1.88212655758537,0.468334905806882,0.579684114443301,0.298509605773748,0.701139929541673,0,0.189403005275089,0.50313580350515,0.889811221596536,0,0.151230923763239,0.466311601748341,1.62640664988597,1.75226443880073,0.899606224327209,2.17368139626763,1.24411862352257,1.59505028734797,1.04349012362347,3.75644022493046,1.14241563650639,1.22061219961398,0.545545977607678,1.71856891267982,4.17630383890644,1.59238355479446,0,0.343395705182793,0.673498977531838,0,2.31143796488764,2.35885750512418,1.56596575179127,2.94717703165954,0.926089897295336,1.71315693154527,1.07453304648892,0,1.31570429747224,1.94358060540469,1.54331230616732,0.506827321959218,0,0,0.303859956177382,3.04168559533808,0.194860308839388,0.265729680626726,0,1.31043939538565,0.245772908753719,2.74705760366215,6.99955885492255,0,0.516644938982447,1.13503190713367,0.552317850755522,0,0.622077260032973,0.127894371303652,0,0,0.655257829152084,0,0.425149840203366,0,0,0,0.157723490002507,1.60114149657094,0,0.3062454773532,2.56916900385838,2.8339315265117,3.67157875831448,1.02558182120378,3.78107544332577,2.6971328461045,2.58361033010962,1.42769420259154,2.25739752552359,1.76954585021611,0.183428598521679,0.346576998451015,1.1441462864015,2.7614397042404,2.98374333174412,1.65462722368366,2.42046082444224,2.34454203369928,0,3.43921026771203,3.84425824164318,3.10672889244615,1.56215619722769,2.27355476151302,2.85371145872581,6.01672289920042,0.548257766857182,1.98484471355718,0,0.638812138197976,1.07140367175657,1.68141861109412,4.85572483389305,3.64259506162076,0.532214220975833,0.230467975111559,1.37190407549935,3.73833531372574,2.23627430113687,1.53651993149159,5.67280149649553,1.49136876415977,0.942693539496011,0.560544326627578,1.82631744101899,0.647782773655864,4.7775168788705,2.85906176706625,0.316027223465453,0.116241425368125,0.173858272302579,0.801711364730253,0.207216164163037,1.19502933965765,0,0.860454717640555,0.709992004383392,2.13033511897894,2.9637093513365,1.14553434272025,0.31020638566432,4.77769469488717,0.782988022584546,0,0.121917924982269,0,0.615976841137482,0,1.45713297917742,0.467878926924211,0.795803100645473,1.78380136166353,0,0.989464650708862,8.60488208330039,0.848915739187391,0.437119121007915,2.82190377816914,0.980593287015622,1.64973582971138,3.14093547383912,2.67341760294377,1.6906229103336,1.52934403219035,1.97366227757693,3.0939786227317,1.49911733887393,0.71421575442263,1.05868461514708,2.08627553391837,2.19100916473955,2.2936464170227,2.15009374727177,0.157771562193185,2.92363407820933,8.72701380680755,4.2322147241232,0,0,0,1.00933139868063,0.218531143927391,0.126698501011437,1.01988829741982,1.3360870263278,3.49200618232411,2.75778293221613,2.72803313585662,3.21556956187414,4.1458471972939,1.96522692137601,1.49263787330687,1.42838658878244,1.93766729508018,3.97278171493491,1.34558235096736,3.94612381324622,4.44657815708082,1.08858373948481,0.684466602170562,1.75115337837928,1.29099969706817,0.332660356546013,3.74455035610483,0.533636729388577,0,0.988077223172456,2.34640942403454,0.855690109280065,0.406896178315738,1.33151354837103,2.21401172950129,1.28227396921293 | |||
|short_description=p1@HIVEP3 | |||
}} |
Latest revision as of 02:55, 18 September 2015
Short description: | p1@HIVEP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HIVEP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000489103, NR_038261, uc001chb.1_5end |
EntrezGene: | HIVEP3 |
HGNC: | 13561 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.07e-18 | 81 |
brain | 2.90e-17 | 68 |
future brain | 2.90e-17 | 68 |
neural tube | 3.37e-15 | 56 |
neural rod | 3.37e-15 | 56 |
future spinal cord | 3.37e-15 | 56 |
neural keel | 3.37e-15 | 56 |
nervous system | 9.70e-15 | 89 |
tube | 1.00e-14 | 192 |
regional part of nervous system | 2.45e-14 | 53 |
regional part of brain | 2.45e-14 | 53 |
neural plate | 7.09e-14 | 82 |
presumptive neural plate | 7.09e-14 | 82 |
neurectoderm | 4.34e-12 | 86 |
regional part of forebrain | 7.84e-12 | 41 |
forebrain | 7.84e-12 | 41 |
anterior neural tube | 7.84e-12 | 41 |
future forebrain | 7.84e-12 | 41 |
adult organism | 3.42e-11 | 114 |
structure with developmental contribution from neural crest | 2.01e-10 | 132 |
telencephalon | 3.94e-10 | 34 |
brain grey matter | 5.08e-10 | 34 |
gray matter | 5.08e-10 | 34 |
anatomical conduit | 6.52e-10 | 240 |
pre-chordal neural plate | 9.62e-10 | 61 |
cerebral hemisphere | 1.80e-09 | 32 |
regional part of telencephalon | 2.82e-09 | 32 |
cerebral cortex | 9.16e-09 | 25 |
pallium | 9.16e-09 | 25 |
ecto-epithelium | 1.03e-08 | 104 |
cell layer | 4.57e-07 | 309 |
regional part of cerebral cortex | 5.58e-07 | 22 |