FFCP PHASE1:Hg19::chr2:68962505..68962521,+: Difference between revisions
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|id=chr2:68962505..68962521,+
|short_description=p13@ARHGAP25
|description=CAGE_peak_13_at_ARHGAP25_5end
|association_with_transcript=0bp_to_ENST00000496266_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9938 | |EntrezGene=9938 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28951 | |HGNC=28951 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000496266_5end | |||
|cluster_id=chr2:68962505..68962521,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_13_at_ARHGAP25_5end | |||
|id=chr2:68962505..68962521,+ | |||
|ontology_enrichment_celltype=CL:0002087!2.48e-39!119;CL:0000738!2.26e-35!140;CL:0002031!3.65e-32!124;CL:0000236!3.82e-29!14;CL:0000037!4.48e-28!172;CL:0000566!4.48e-28!172;CL:0000945!1.62e-26!24;CL:0000826!1.62e-26!24;CL:0002032!3.03e-26!165;CL:0000837!3.03e-26!165;CL:0000542!3.25e-26!53;CL:0000051!3.25e-26!53;CL:0000988!1.34e-25!182;CL:0000838!9.59e-25!52;CL:0002194!2.13e-11!63;CL:0000576!2.13e-11!63;CL:0000040!2.13e-11!63;CL:0000559!2.13e-11!63;CL:0000766!2.37e-11!76;CL:0002009!7.33e-11!65;CL:0000839!1.30e-10!70;CL:0000557!2.25e-10!71;CL:0002619!1.76e-07!3;CL:0000763!6.50e-07!112;CL:0000049!6.50e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000945;9.71e-55;24!CL:0000236;9.43e-53;13!CL:0000542;1.99e-22;53!CL:0002619;8.18e-21;3!CL:0000235;5.83e-11;6!CL:0002087;8.00e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.60e-55,24;CL:0000826,6.60e-55,24;CL:0000236,5.46e-49,14;CL:0000542,1.12e-30,53;CL:0000051,1.12e-30,53;CL:0000838,1.81e-27,52;CL:0002087,7.89e-25,115;CL:0002031,2.42e-21,120;CL:0002619,8.77e-21,3;CL:0000738,2.18e-20,136;CL:0002032,1.35e-16,161;CL:0000837,1.35e-16,161;CL:0000037,9.80e-16,168;CL:0000988,9.98e-15,177;CL:0000235,7.16e-11,6 | |||
|ontology_enrichment_development_v019=CL:0000051;1.99e-22;53!UBERON:0004872;2.37e-09;7!UBERON:0001045;1.57e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;2.89e-08;1!DOID:0050177;2.89e-08;1!DOID:0050427;2.89e-08;1!DOID:12603;5.43e-08;1!DOID:0060058;7.88e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.33e-08,1;DOID:0050177,2.33e-08,1;DOID:0050427,2.33e-08,1;DOID:12603,5.07e-08,1;DOID:0060058,7.73e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002193!5.98e-14!112;UBERON:0002390!6.02e-14!102;UBERON:0003061!6.02e-14!102;UBERON:0002405!6.24e-09!115;UBERON:0002371!1.61e-08!80;UBERON:0001474!1.63e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;5.18e-10;3!UBERON:0002372;1.31e-08;1!UBERON:0001961;1.31e-08;1!UBERON:0001744;1.31e-08;1!UBERON:0001042;1.31e-08;1!UBERON:0001735;1.31e-08;1!UBERON:0001154;1.57e-08;1!UBERON:0001153;1.57e-08;1!UBERON:0009854;1.57e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,4.95e-10,3;UBERON:0004854,4.95e-10,3;UBERON:0009034,4.95e-10,3;UBERON:0002095,4.95e-10,3;UBERON:0004782,4.95e-10,3;UBERON:0003281,4.95e-10,3;UBERON:0009664,4.95e-10,3;UBERON:0002296,4.95e-10,3;UBERON:0005602,4.95e-10,3;UBERON:0001179,4.95e-10,3;UBERON:0006293,4.95e-10,3;UBERON:0002372,1.22e-08,1;UBERON:0001961,1.22e-08,1;UBERON:0001744,1.22e-08,1;UBERON:0001735,1.22e-08,1;UBERON:0001154,1.52e-08,1;UBERON:0001153,1.52e-08,1;UBERON:0001045,1.52e-08,1 | |||
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| ||
|short_description=p13@ARHGAP25 | |||
}} | }} |
Latest revision as of 03:04, 18 September 2015
Short description: | p13@ARHGAP25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_ARHGAP25_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_ENST00000496266_5end |
EntrezGene: | ARHGAP25 |
HGNC: | 28951 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.60e-55 | 24 |
pro-B cell | 6.60e-55 | 24 |
B cell | 5.46e-49 | 14 |
lymphocyte | 1.12e-30 | 53 |
common lymphoid progenitor | 1.12e-30 | 53 |
lymphoid lineage restricted progenitor cell | 1.81e-27 | 52 |
nongranular leukocyte | 7.89e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 2.42e-21 | 120 |
adult endothelial progenitor cell | 8.77e-21 | 3 |
leukocyte | 2.18e-20 | 136 |
hematopoietic oligopotent progenitor cell | 1.35e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.35e-16 | 161 |
hematopoietic stem cell | 9.80e-16 | 168 |
hematopoietic cell | 9.98e-15 | 177 |
macrophage | 7.16e-11 | 6 |
Ontology term | p-value | n |
---|---|---|
spleen | 4.95e-10 | 3 |
gastrointestinal system mesentery | 4.95e-10 | 3 |
stomach region | 4.95e-10 | 3 |
mesentery | 4.95e-10 | 3 |
gastrointestinal system serosa | 4.95e-10 | 3 |
mesentery of stomach | 4.95e-10 | 3 |
gut mesentery | 4.95e-10 | 3 |
dorsal mesentery | 4.95e-10 | 3 |
dorsal mesogastrium | 4.95e-10 | 3 |
peritoneal cavity | 4.95e-10 | 3 |
spleen primordium | 4.95e-10 | 3 |
tonsil | 1.22e-08 | 1 |
mucosa-associated lymphoid tissue | 1.22e-08 | 1 |
lymphoid tissue | 1.22e-08 | 1 |
tonsillar ring | 1.22e-08 | 1 |
vermiform appendix | 1.52e-08 | 1 |
caecum | 1.52e-08 | 1 |
midgut | 1.52e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.33e-08 | 1 |
monogenic disease | 2.33e-08 | 1 |
xeroderma pigmentosum | 2.33e-08 | 1 |
acute leukemia | 5.07e-08 | 1 |
lymphoma | 7.73e-07 | 10 |