FFCP PHASE1:Hg19::chr13:93879313..93879326,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:93879313..93879326,+ to FFCP PHASE1:Hg19::chr13:93879313..93879326,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10082 | |EntrezGene=10082 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4454 | |HGNC=4454 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y625 | |UniProt=Q9Y625 | ||
|association_with_transcript=218bp_to_ENST00000377047_5end | |||
|cluster_id=chr13:93879313..93879326,+ | |||
|coexpression_cluster_id=C1192 | |||
|description=CAGE_peak_7_at_GPC6_5end | |||
|id=chr13:93879313..93879326,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.59e-23!180;CL:0000057!3.13e-12!75;CL:0000393!3.19e-08!60;CL:0000211!3.19e-08!60;CL:0000680!1.02e-07!57;CL:0000056!1.02e-07!57;CL:0000355!1.02e-07!57;CL:0000187!1.86e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000153;3.97e-08;9!CL:0000447;3.97e-08;9!CL:0002494;1.13e-07;16!CL:0000136;1.43e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.55e-09,76;CL:0000393,1.87e-08,61;CL:0000211,1.87e-08,61;CL:0000153,4.45e-08,9;CL:0000447,4.45e-08,9;CL:0000187,1.60e-07,55;CL:0002494,1.78e-07,16;CL:0000136,2.47e-07,15;CL:0000680,2.65e-07,58;CL:0000056,2.65e-07,58;CL:0000355,2.65e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!4.11e-17!365;UBERON:0000481!2.84e-13!347;UBERON:0000119!4.86e-10!312;UBERON:0000483!5.64e-10!309;UBERON:0000073!2.45e-08!94;UBERON:0001016!2.45e-08!94;UBERON:0000468!2.68e-08!659;UBERON:0005743!8.01e-08!86;UBERON:0000477!1.55e-07!286;UBERON:0002100!2.82e-07!216;UBERON:0001017!4.06e-07!82;UBERON:0002385!5.71e-07!63;UBERON:0001015!5.71e-07!63;UBERON:0000383!5.71e-07!63;UBERON:0005256!6.01e-07!143;UBERON:0001134!7.95e-07!61;UBERON:0002036!7.95e-07!61;UBERON:0003082!7.95e-07!61;UBERON:0000922!9.52e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.88e-07;8!UBERON:0000982;2.88e-07;8!UBERON:0004770;2.88e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.76e-07,160;UBERON:0009142,1.76e-07,160;UBERON:0004905,2.28e-07,8;UBERON:0000982,2.28e-07,8;UBERON:0004770,2.28e-07,8;UBERON:0002385,6.78e-07,64;UBERON:0001015,6.78e-07,64;UBERON:0000383,6.78e-07,64;UBERON:0005256,7.01e-07,122;UBERON:0001134,7.56e-07,62;UBERON:0002036,7.56e-07,62;UBERON:0003082,7.56e-07,62 | |||
|phase1_expression=1.63510541343501,1.92690471501885,3.38290569830331,4.00293193412522,3.5756887554183,6.10636966870258,0,0.631719873426831,2.08948502559871,0.245733936501509,0,0,0,3.34169152992126,5.30235801164665,0,0,0,0.487932798790507,0.61560529038394,0.204000691244253,1.88072832886853,3.14859585844162,1.77936752594749,2.00868223351684,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,3.32442660793179,2.1686349143074,2.00535164254356,4.34539556882471,1.5905718941022,9.24606253575008,3.68685786939865,4.87804674417641,2.81071314218003,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47274756525787,0.633152558322899,3.31022952033047,8.60509862246441,1.06400514659507,1.12135520028461,4.2699598291882,1.72667283892012,3.42332138939743,2.02066008104532,0.980771418680752,1.05950199351452,1.15235184896,0.937285727335186,0.624320153660641,0,0.149448680551801,0.822041490506354,1.13311061057692,0.140450806702248,0.408308342509787,0.859840221182376,0.929932030581889,3.56400857184616,0.494533858557114,0,0.718618141816238,0.336672227908132,0.500474079487857,0,1.75591048352335,0,1.20190447125277,0.340296549480063,1.07633781413317,0.640672166455702,1.27159140695737,3.00091096084402,1.33968288009971,2.83404594050192,0.744467425326359,2.36286865137773,0.974370051611986,2.77677151668526,1.56484827691909,1.61646056818812,3.55009592516614,1.10827308050404,0,0,0,0,0.121973706129595,1.19276791489337,0.69716365721711,1.0366105501537,0.252320850875628,0.72995471815166,0,0,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.8231480226628,0,2.53510069643662,0.982827216677626,1.77236972004421,0,0,1.88724591328378,0.329250856225877,0,0,0.185176890317059,0,0,2.88662684050547,2.43453850447661,7.51415643109259,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.447792613514241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1798003441664,0.2933531432838,5.17086863031111,3.57656445851882,0,0.531876233169741,0,0,1.41849132023278,0.266422179016099,5.29018576535146,1.08524321078289,0,0.977208552881205,1.06617584622764,0.791951872933429,3.31583314765545,0,0.799783929456456,0,0,0,0.239624855491583,1.14861935834114,0,0.434343920002738,1.64381058040307,0.537182889719687,0,0,0,0,1.77866236955724,0,1.54657762555539,0.502548796003046,0,0,0,0,7.11610651971011,2.50085260529839,1.35632511849868,0.623912584592421,0,0,0.234282829985426,2.10662269809403,0,1.03473071292505,0,0.921845842708516,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,2.97729369382532,1.53461973288062,2.24528075546459,2.56278298511402,0.511707249066704,5.46903331888265,2.96836132889982,0.616838775210622,2.84098760501003,1.88892458831761,4.15403543346897,0.813472649219715,0,0.200506470303285,0.0920809889358963,1.14814448164607,1.45672934405374,2.75361271414791,0.451199612907412,0.924184045252977,0,0,1.58327443339314,0,0,0.215915916102139,1.54227252690289,0.812839312631559,0,0,0,0.223874754722178,0,0,0.769350375349168,0.656029291399411,1.30151357865721,0.824328093181778,0.732555718546747,0.907604499126468,0,0,6.42735719376638,2.61010939388729,1.69453478826109,3.37708084397485,2.06754858726796,3.97454906012612,2.32026710262766,1.87498580315422,6.94449878044551,0.165284915360978,0,0.255225424989168,0.10115778085555,0,9.12955805808856,0.6970372701606,1.23213432070436,2.12922412126809,0.869932992075073,0.37064843820784,0.715624433709956,1.116475108079,2.21465597303108,3.0500831027812,1.02359116524534,2.99557291623744,3.18203247925937,0,2.15846949099978,0.54907405947211,1.17812402345686,1.41527737101321,0,2.10629228119491,1.46290121726877,1.70599442741899,0,2.18399858252777,2.82810863907426,3.39024349860728,1.65409603063837,0,0.438450885253763,1.15755106853338,1.31178950409327,0.202910376962704,0.6196469961995,0.845086807596724,0.717056761020258,0.392996164052485,0.7133421029625,0.354761064070598,3.16661452946496,1.97576935775941,0,0.699869440489966,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.635020748171649,0,0.842391534340376,0,0,0,0.677167111206413,0,0,0,0,0.307240764308458,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0.667852230137435,0,0.211125408127993,2.39097585901284,0.552567831062295,0,0.613612095012929,0,0.311039587661807,0.0898683511473268,0,0,1.38100767891707,0,0,2.90799823828566,0.371072392647405,0,0.260427761085233,0,0.724999575434793,0,0.254253650292766,0,3.10269035917318,2.62444152044929,2.77799991893268,0.885741385813839,0.60298219312704,0,0.442317039724898,0.295547618953547,0.438770794307945,0,0,0.769502585037971,4.89950840142105,0,0,0,0,0.0915975934018623,0,0,2.04074333313532,0,0,0,0.167821586975843,0,0.158936578980379,0,0,0,0.865554558968364,0,0.707660516026713,3.66618086960175,0.296521128680622,0.86494757262552,0.522109747527277,0.539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| ||
|short_description=p7@GPC6 | |||
}} | }} |
Latest revision as of 04:58, 18 September 2015
Short description: | p7@GPC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_GPC6_5end |
Coexpression cluster: | C1192_extraskeletal_Cardiac_Lens_cholangiocellular_pineal_Fibroblast_rectum |
Association with transcript: | 218bp_to_ENST00000377047_5end |
EntrezGene: | GPC6 |
HGNC: | 4454 |
UniProt: | Q9Y625 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.55e-09 | 76 |
electrically responsive cell | 1.87e-08 | 61 |
electrically active cell | 1.87e-08 | 61 |
GAG secreting cell | 4.45e-08 | 9 |
carbohydrate secreting cell | 4.45e-08 | 9 |
muscle cell | 1.60e-07 | 55 |
cardiocyte | 1.78e-07 | 16 |
fat cell | 2.47e-07 | 15 |
muscle precursor cell | 2.65e-07 | 58 |
myoblast | 2.65e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.65e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.76e-07 | 160 |
entire embryonic mesenchyme | 1.76e-07 | 160 |
articulation | 2.28e-07 | 8 |
skeletal joint | 2.28e-07 | 8 |
articular system | 2.28e-07 | 8 |
muscle tissue | 6.78e-07 | 64 |
musculature | 6.78e-07 | 64 |
musculature of body | 6.78e-07 | 64 |
trunk mesenchyme | 7.01e-07 | 122 |
skeletal muscle tissue | 7.56e-07 | 62 |
striated muscle tissue | 7.56e-07 | 62 |
myotome | 7.56e-07 | 62 |