FFCP PHASE1:Hg19::chr1:46089718..46089734,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:46089718..46089734,-
|short_description=p1@CCDC17
|description=CAGE_peak_1_at_CCDC17_5end
|association_with_transcript=0bp_to_ENST00000343901,ENST000004211...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=149483 | |EntrezGene=149483 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26574 | |HGNC=26574 | ||
|TSSclassifier=strong | |||
|UniProt=Q96LX7,F2Z395 | |UniProt=Q96LX7,F2Z395 | ||
|association_with_transcript=0bp_to_ENST00000343901,ENST00000421127,ENST00000479529,ENST00000525599,ENST00000528266,NM_001114938,NM_001190182,uc001com.3,uc001con.3,uc009vxy.2,uc009vxz.2,uc010ols.1,uc010olt.1_5end | |||
|cluster_id=chr1:46089718..46089734,- | |||
|coexpression_cluster_id=C81 | |||
|description=CAGE_peak_1_at_CCDC17_5end | |||
|id=chr1:46089718..46089734,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.37e-07;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:9119;7.88e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:9119,6.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.98e-31!115;UBERON:0002298!1.87e-16!8;UBERON:0001049!3.95e-14!57;UBERON:0005068!3.95e-14!57;UBERON:0006241!3.95e-14!57;UBERON:0007135!3.95e-14!57;UBERON:0000955!8.64e-14!69;UBERON:0006238!8.64e-14!69;UBERON:0001017!9.45e-14!82;UBERON:0002616!1.59e-13!59;UBERON:0001894!4.10e-13!7;UBERON:0006222!4.10e-13!7;UBERON:0005743!6.71e-13!86;UBERON:0001896!3.90e-12!3;UBERON:0005290!3.90e-12!3;UBERON:0010096!3.90e-12!3;UBERON:0003075!8.71e-12!86;UBERON:0007284!8.71e-12!86;UBERON:0000988!9.21e-12!3;UBERON:0000073!3.02e-11!94;UBERON:0001016!3.02e-11!94;UBERON:0002346!4.60e-11!90;UBERON:0004733!9.52e-11!12;UBERON:0002028!9.52e-11!12;UBERON:0007277!9.52e-11!12;UBERON:0002308!3.29e-10!9;UBERON:0000125!3.29e-10!9;UBERON:0004732!7.20e-10!13;UBERON:0003127!3.18e-09!2;UBERON:0000341!3.44e-09!2;UBERON:0000369!8.67e-09!4;UBERON:0002435!8.67e-09!4;UBERON:0000204!8.67e-09!4;UBERON:0010082!8.67e-09!4;UBERON:0002148!9.09e-09!2;UBERON:0009662!9.09e-09!2;UBERON:0000007!1.55e-08!2;UBERON:0001873!1.67e-08!2;UBERON:0010122!1.67e-08!2;UBERON:0003076!1.84e-08!15;UBERON:0003057!1.84e-08!15;UBERON:0001897!3.14e-08!2;UBERON:0002780!3.43e-08!41;UBERON:0001890!3.43e-08!41;UBERON:0006240!3.43e-08!41;UBERON:0000153!3.88e-08!129;UBERON:0007811!3.88e-08!129;UBERON:0003080!5.96e-08!42;UBERON:0002360!7.52e-08!2;UBERON:0000094!7.52e-08!2;UBERON:0007645!7.52e-08!2;UBERON:0000033!8.45e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;8.33e-23;6!UBERON:0003127;5.87e-19;2!UBERON:0000341;7.02e-19;2!UBERON:0002148;6.35e-18;2!UBERON:0006331;6.35e-18;2!UBERON:0009662;6.35e-18;2!UBERON:0000988;2.83e-12;3!UBERON:0001896;2.83e-12;3!UBERON:0005290;2.83e-12;3!UBERON:0003126;6.39e-12;7!UBERON:0001005;6.39e-12;7!UBERON:0004733;1.56e-11;12!UBERON:0002028;1.56e-11;12!UBERON:0004732;1.16e-10;13!UBERON:0002171;1.80e-10;1!UBERON:0006518;1.80e-10;1!UBERON:0008949;1.80e-10;1!UBERON:0000101;1.80e-10;1!UBERON:0002167;1.80e-10;1!UBERON:0001301;2.07e-10;1!UBERON:0005795;4.64e-10;1!UBERON:0000125;4.70e-09;9!UBERON:0002308;4.70e-09;9!UBERON:0005178;1.97e-07;34!UBERON:0002224;1.97e-07;34!UBERON:0000974;7.05e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,1.11e-22,6;UBERON:0003127,5.88e-19,2;UBERON:0000341,7.03e-19,2;UBERON:0002148,6.35e-18,2;UBERON:0006331,6.35e-18,2;UBERON:0009662,6.35e-18,2;UBERON:0007023,1.49e-12,114;UBERON:0000988,2.83e-12,3;UBERON:0001896,3.77e-12,3;UBERON:0005290,3.77e-12,3;UBERON:0010096,3.77e-12,3;UBERON:0003126,7.56e-12,7;UBERON:0001005,7.56e-12,7;UBERON:0004733,1.79e-11,12;UBERON:0002028,1.79e-11,12;UBERON:0007277,1.79e-11,12;UBERON:0004732,1.32e-10,13;UBERON:0002171,1.80e-10,1;UBERON:0006518,1.80e-10,1;UBERON:0008949,1.80e-10,1;UBERON:0000101,1.80e-10,1;UBERON:0002167,1.80e-10,1;UBERON:0001301,2.16e-10,1;UBERON:0003076,3.23e-09,15;UBERON:0003057,3.23e-09,15;UBERON:0000125,4.27e-09,9;UBERON:0002308,4.27e-09,9;UBERON:0005178,6.27e-09,34;UBERON:0002224,6.27e-09,34;UBERON:0005181,1.16e-08,35;UBERON:0008947,6.15e-08,38;UBERON:0003258,6.15e-08,38 | |||
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| ||
|short_description=p1@CCDC17 | |||
}} | }} |
Latest revision as of 08:10, 18 September 2015
Short description: | p1@CCDC17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC17_5end |
Coexpression cluster: | C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid |
Association with transcript: | 0bp_to_ENST00000343901, ENST00000421127, ENST00000479529, ENST00000525599, ENST00000528266, NM_001114938, NM_001190182, uc001com.3, uc001con.3, uc009vxy.2, uc009vxz.2, uc010ols.1, uc010olt.1_5end |
EntrezGene: | CCDC17 |
HGNC: | 26574 |
UniProt: | Q96LX7F2Z395 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brainstem | 1.11e-22 | 6 |
open tracheal system trachea | 5.88e-19 | 2 |
throat | 7.03e-19 | 2 |
locus ceruleus | 6.35e-18 | 2 |
brainstem nucleus | 6.35e-18 | 2 |
hindbrain nucleus | 6.35e-18 | 2 |
adult organism | 1.49e-12 | 114 |
pons | 2.83e-12 | 3 |
medulla oblongata | 3.77e-12 | 3 |
myelencephalon | 3.77e-12 | 3 |
future myelencephalon | 3.77e-12 | 3 |
trachea | 7.56e-12 | 7 |
respiratory airway | 7.56e-12 | 7 |
segmental subdivision of hindbrain | 1.79e-11 | 12 |
hindbrain | 1.79e-11 | 12 |
presumptive hindbrain | 1.79e-11 | 12 |
segmental subdivision of nervous system | 1.32e-10 | 13 |
lower lobe of right lung | 1.80e-10 | 1 |
right lung lobe | 1.80e-10 | 1 |
lower lobe of lung | 1.80e-10 | 1 |
lobe of lung | 1.80e-10 | 1 |
right lung | 1.80e-10 | 1 |
epididymis | 2.16e-10 | 1 |
posterior neural tube | 3.23e-09 | 15 |
chordal neural plate | 3.23e-09 | 15 |
neural nucleus | 4.27e-09 | 9 |
nucleus of brain | 4.27e-09 | 9 |
thoracic cavity element | 6.27e-09 | 34 |
thoracic cavity | 6.27e-09 | 34 |
thoracic segment organ | 1.16e-08 | 35 |
respiratory primordium | 6.15e-08 | 38 |
endoderm of foregut | 6.15e-08 | 38 |
Ontology term | p-value | n |
---|---|---|
acute myeloid leukemia | 6.33e-10 | 1 |