FFCP PHASE1:Hg19::chr19:4279462..4279473,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=-185bp_to_AK055673_5end | |association_with_transcript=-185bp_to_AK055673_5end | ||
|cluster_id=chr19:4279462..4279473,+ | |||
|coexpression_cluster_id=C1241 | |||
|description=CAGE_peak_13_at_SHD_5end | |description=CAGE_peak_13_at_SHD_5end | ||
|id=chr19:4279462..4279473,+ | |id=chr19:4279462..4279473,+ | ||
|ontology_enrichment_celltype=CL:0000784!2.62e-14!3;CL:0000188!1.75e-07!9 | |ontology_enrichment_celltype=CL:0000784!2.62e-14!3;CL:0000188!1.75e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000784;6.68e-60;3!CL:0000333;2.26e-36;5!CL:0000451;6.02e-17;10!CL:0002321;1.25e-12;15!CL:0000123;3.89e-11;2!CL:0000242;3.89e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,5.46e-60,3;CL:0000451,5.70e-17,10;CL:0000242,3.35e-11,2;CL:0000333,9.23e-08,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!2.40e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:169;1.86e-30;6!DOID:171;1.36e-18;10!DOID:3095;8.25e-09;22!DOID:2994;8.25e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.86e-30,6;DOID:171,1.36e-18,10;DOID:3095,8.25e-09,22;DOID:2994,8.25e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.06e-26!57;UBERON:0005068!5.06e-26!57;UBERON:0006241!5.06e-26!57;UBERON:0007135!5.06e-26!57;UBERON:0000073!1.86e-22!94;UBERON:0001016!1.86e-22!94;UBERON:0002616!2.39e-22!59;UBERON:0000955!2.48e-22!69;UBERON:0006238!2.48e-22!69;UBERON:0001017!4.50e-20!82;UBERON:0005743!6.54e-19!86;UBERON:0001950!5.25e-18!20;UBERON:0002791!1.54e-17!33;UBERON:0002298!1.72e-17!8;UBERON:0003075!2.11e-17!86;UBERON:0007284!2.11e-17!86;UBERON:0001893!5.91e-17!34;UBERON:0002020!6.08e-17!34;UBERON:0003528!6.08e-17!34;UBERON:0002346!2.09e-16!90;UBERON:0003076!2.85e-16!15;UBERON:0003057!2.85e-16!15;UBERON:0002619!2.87e-16!22;UBERON:0004733!1.06e-15!12;UBERON:0002028!1.06e-15!12;UBERON:0007277!1.06e-15!12;UBERON:0004732!2.03e-14!13;UBERON:0000956!3.64e-14!25;UBERON:0000203!3.64e-14!25;UBERON:0002780!1.17e-13!41;UBERON:0001890!1.17e-13!41;UBERON:0006240!1.17e-13!41;UBERON:0003080!2.84e-13!42;UBERON:0007023!4.69e-13!115;UBERON:0001869!6.07e-13!32;UBERON:0001896!1.21e-12!3;UBERON:0005290!1.21e-12!3;UBERON:0010096!1.21e-12!3;UBERON:0004121!3.91e-12!169;UBERON:0000924!1.03e-11!173;UBERON:0006601!1.03e-11!173;UBERON:0000033!1.29e-11!123;UBERON:0000153!7.64e-11!129;UBERON:0007811!7.64e-11!129;UBERON:0003056!8.20e-10!61;UBERON:0000013!9.56e-09!5;UBERON:0002410!9.56e-09!5;UBERON:0002021!2.55e-08!5;UBERON:0001872!5.21e-08!5;UBERON:0002680!1.85e-07!9;UBERON:0001895!1.85e-07!9;UBERON:0010092!1.85e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.26e-36;5!UBERON:0002410;2.26e-36;5!UBERON:0000010;1.42e-20;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.26e-36,5;UBERON:0002410,2.26e-36,5;UBERON:0000010,1.42e-20,8 | |||
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| ||
|short_description=p13@SHD | |short_description=p13@SHD | ||
}} | }} |
Latest revision as of 08:42, 18 September 2015
Short description: | p13@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SHD_5end |
Coexpression cluster: | C1241_neuroblastoma_small_Skeletal_Dendritic_Pericytes_merkel_mesenchymal |
Association with transcript: | -185bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 5.46e-60 | 3 |
dendritic cell | 5.70e-17 | 10 |
Merkel cell | 3.35e-11 | 2 |
migratory neural crest cell | 9.23e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.26e-36 | 5 |
autonomic nervous system | 2.26e-36 | 5 |
peripheral nervous system | 1.42e-20 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.86e-30 | 6 |
neuroectodermal tumor | 1.36e-18 | 10 |
germ cell and embryonal cancer | 8.25e-09 | 22 |
germ cell cancer | 8.25e-09 | 22 |