FFCP PHASE1:Hg19::chr19:4279507..4279523,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=-135bp_to_AK055673_5end | |association_with_transcript=-135bp_to_AK055673_5end | ||
|cluster_id=chr19:4279507..4279523,+ | |||
|coexpression_cluster_id=C2493 | |coexpression_cluster_id=C2493 | ||
|description=CAGE_peak_6_at_SHD_5end | |description=CAGE_peak_6_at_SHD_5end | ||
|id=chr19:4279507..4279523,+ | |id=chr19:4279507..4279523,+ | ||
|ontology_enrichment_celltype=CL:0000333;1.51e-23;5!CL:0002032;1.10e-13;1!CL:0000557;1.10e-13;1!CL:0002321;3.07e-08;15!CL:0000123;1.75e-07;2!CL:0000242;1.75e-07;2 | |ontology_enrichment_celltype=CL:0002322!5.92e-10!5;CL:0000242!1.02e-07!2 | ||
| | |ontology_enrichment_celltype_v019=CL:0000333;1.51e-23;5!CL:0002032;1.10e-13;1!CL:0000557;1.10e-13;1!CL:0002321;3.07e-08;15!CL:0000123;1.75e-07;2!CL:0000242;1.75e-07;2 | ||
|ontology_enrichment_disease=DOID:169;9.70e-20;6!DOID:171;4.31e-12;10!DOID:3095;1.50e-09;22!DOID:2994;1.50e-09;22 | |ontology_enrichment_celltype_v019_2=CL:0000242,1.36e-07,2 | ||
|ontology_enrichment_uberon=UBERON:0000013;1.51e-23;5!UBERON:0002410;1.51e-23;5!UBERON:0000010;2.27e-13;8!UBERON:0001134;1.62e-07;16!UBERON:0002036;1.62e-07;16!UBERON:0001875;1.75e-07;2!UBERON:0006514;1.75e-07;2 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:169!1.31e-09!6 | |||
|ontology_enrichment_disease_v019=DOID:169;9.70e-20;6!DOID:171;4.31e-12;10!DOID:3095;1.50e-09;22!DOID:2994;1.50e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,9.72e-20,6;DOID:171,4.31e-12,10;DOID:3095,1.50e-09,22;DOID:2994,1.50e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.70e-27!94;UBERON:0001016!3.70e-27!94;UBERON:0001049!7.79e-25!57;UBERON:0005068!7.79e-25!57;UBERON:0006241!7.79e-25!57;UBERON:0007135!7.79e-25!57;UBERON:0001893!9.44e-25!34;UBERON:0002619!4.35e-24!22;UBERON:0001017!8.23e-24!82;UBERON:0001869!1.15e-23!32;UBERON:0002791!7.79e-23!33;UBERON:0001950!8.95e-23!20;UBERON:0005743!2.18e-22!86;UBERON:0002020!4.21e-22!34;UBERON:0003528!4.21e-22!34;UBERON:0002616!1.13e-21!59;UBERON:0000955!3.58e-21!69;UBERON:0006238!3.58e-21!69;UBERON:0000956!6.53e-21!25;UBERON:0000203!6.53e-21!25;UBERON:0002780!7.39e-20!41;UBERON:0001890!7.39e-20!41;UBERON:0006240!7.39e-20!41;UBERON:0003080!2.73e-19!42;UBERON:0003075!1.45e-17!86;UBERON:0007284!1.45e-17!86;UBERON:0002346!1.67e-16!90;UBERON:0001872!3.74e-16!5;UBERON:0004121!4.67e-16!169;UBERON:0000924!1.74e-15!173;UBERON:0006601!1.74e-15!173;UBERON:0003056!1.27e-13!61;UBERON:0000013!1.53e-11!5;UBERON:0002410!1.53e-11!5;UBERON:0007023!1.94e-11!115;UBERON:0000033!2.16e-11!123;UBERON:0000153!1.42e-10!129;UBERON:0007811!1.42e-10!129;UBERON:0000200!1.84e-08!6;UBERON:0003076!9.13e-07!15;UBERON:0003057!9.13e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.51e-23;5!UBERON:0002410;1.51e-23;5!UBERON:0000010;2.27e-13;8!UBERON:0001134;1.62e-07;16!UBERON:0002036;1.62e-07;16!UBERON:0001875;1.75e-07;2!UBERON:0006514;1.75e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.51e-23,5;UBERON:0002410,1.51e-23,5;UBERON:0000010,2.27e-13,8;UBERON:0001875,1.99e-07,2;UBERON:0006514,1.99e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.232387885739037,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35339005608971,0,0,0.551346289938122,0,0,0,1.78064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99921590399346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0.344743373241465,0,0.347249989866585,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0.321506296930038,0.137539436597234,0,0,0,0.242998226632099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0,0,0,0.248385611765534,0,0,0,0,0,1.87333962322753,0.28984205722165,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3594440755958,21.9962615249231,0.314531883711793,4.36838552768056,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0.553258019713743,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0.781078098613847,0.206686796501184,0.380494861163441,1.64092442705466,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,1.27865567904938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0.485710993059139,0,9.74858798290704,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,11.9096590950751,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.232387885739037,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35339005608971,0,0,0.551346289938122,0,0,0,1.78064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99921590399346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0.344743373241465,0,0.347249989866585,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0.321506296930038,0.137539436597234,0,0,0,0.242998226632099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0,0,0,0.248385611765534,0,0,0,0,0,1.87333962322753,0.28984205722165,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3594440755958,21.9962615249231,0.314531883711793,4.36838552768056,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0.553258019713743,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0.781078098613847,0.206686796501184,0.380494861163441,1.64092442705466,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,1.27865567904938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0.485710993059139,0,9.74858798290704,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,11.9096590950751,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p6@SHD | |short_description=p6@SHD | ||
}} | }} |
Latest revision as of 08:44, 18 September 2015
Short description: | p6@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SHD_5end |
Coexpression cluster: | C2493_neuroblastoma_acute_teratocarcinoma_small_merkel_rhabdomyosarcoma_occipital |
Association with transcript: | -135bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.36e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.51e-23 | 5 |
autonomic nervous system | 1.51e-23 | 5 |
peripheral nervous system | 2.27e-13 | 8 |
globus pallidus | 1.99e-07 | 2 |
pallidum | 1.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 9.72e-20 | 6 |
neuroectodermal tumor | 4.31e-12 | 10 |
germ cell and embryonal cancer | 1.50e-09 | 22 |
germ cell cancer | 1.50e-09 | 22 |