FFCP PHASE1:Hg19::chr6:34205372..34205412,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3159 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=5010 | |||
|TSSclassifier=strong | |||
|UniProt=P17096 | |||
|association_with_transcript=0bp_to_M23619_5end | |||
|cluster_id=chr6:34205372..34205412,+ | |||
|description=CAGE_peak_5_at_HMGA1_5end | |||
|id=chr6:34205372..34205412,+ | |||
|ontology_enrichment_celltype=CL:0000012!4.61e-24!682;CL:0000548!7.95e-24!679;CL:0000004!7.95e-24!679;CL:0000255!7.95e-24!679;CL:0002321!1.54e-22!248;CL:0000220!2.24e-22!246;CL:0000055!4.97e-19!180;CL:0000003!6.76e-18!722;CL:0000066!6.12e-17!254;CL:0000183!3.76e-15!59;CL:0000222!8.74e-15!119;CL:0000680!1.17e-14!57;CL:0000056!1.17e-14!57;CL:0000355!1.17e-14!57;CL:0000187!3.34e-14!54;CL:0000192!5.19e-14!42;CL:0000514!5.19e-14!42;CL:0000393!8.23e-13!60;CL:0000211!8.23e-13!60;CL:0000359!8.32e-12!32;CL:0000144!8.34e-11!625;CL:0000333!3.28e-09!41;CL:0000221!2.10e-07!71;CL:0000076!5.74e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.61e-11;32!CL:0000192;9.72e-11;43!CL:0000187;2.38e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.23e-23,250;CL:0000066,1.06e-16,253;CL:0000222,3.00e-15,121;CL:0000680,4.76e-15,58;CL:0000056,4.76e-15,58;CL:0000355,4.76e-15,58;CL:0000187,1.38e-14,55;CL:0000192,2.17e-14,43;CL:0000514,2.17e-14,43;CL:0000393,4.05e-13,61;CL:0000211,4.05e-13,61;CL:0000359,6.88e-12,32;CL:0000333,2.84e-09,41;CL:0000221,1.06e-07,72;CL:0000076,2.43e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000514;9.72e-11;43!CL:0000355;2.39e-08;58 | |||
|ontology_enrichment_disease=DOID:14566!1.55e-23!239;DOID:162!3.53e-21!235;DOID:0050686!4.66e-11!137;DOID:0050687!6.28e-11!143;DOID:305!1.30e-10!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,9.20e-24,239;DOID:162,2.21e-21,235;DOID:0050686,2.99e-11,137;DOID:0050687,6.26e-11,143;DOID:305,1.27e-10,106 | |||
|ontology_enrichment_uberon=UBERON:0004290!9.87e-15!70;UBERON:0000914!1.35e-14!83;UBERON:0002329!1.35e-14!83;UBERON:0003077!1.35e-14!83;UBERON:0003059!1.35e-14!83;UBERON:0007282!1.35e-14!83;UBERON:0009618!1.35e-14!83;UBERON:0007285!1.35e-14!83;UBERON:0005256!3.10e-13!143;UBERON:0003104!1.62e-12!238;UBERON:0009142!1.62e-12!238;UBERON:0001134!1.68e-12!61;UBERON:0002036!1.68e-12!61;UBERON:0003082!1.68e-12!61;UBERON:0000486!6.32e-12!82;UBERON:0000490!7.26e-12!138;UBERON:0002385!2.32e-11!63;UBERON:0001015!2.32e-11!63;UBERON:0000383!2.32e-11!63;UBERON:0001637!3.36e-10!42;UBERON:0003509!3.36e-10!42;UBERON:0004572!3.36e-10!42;UBERON:0003914!1.47e-09!118;UBERON:0002100!2.48e-09!216;UBERON:0004573!2.86e-09!33;UBERON:0004571!2.86e-09!33;UBERON:0001981!3.61e-08!60;UBERON:0007500!3.61e-08!60;UBERON:0004537!3.61e-08!60;UBERON:0006965!3.61e-08!60;UBERON:0002049!7.88e-08!79;UBERON:0007798!7.88e-08!79;UBERON:0001048!1.81e-07!168;UBERON:0000055!2.45e-07!69;UBERON:0000481!5.47e-07!347;UBERON:0000119!6.31e-07!312;UBERON:0004872!8.36e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.57e-08;33!UBERON:0004571;1.57e-08;33!UBERON:0001637;3.26e-07;42!UBERON:0003509;3.26e-07;42!UBERON:0004572;3.26e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.86e-15,78;UBERON:0002329,5.03e-15,71;UBERON:0003059,5.03e-15,71;UBERON:0007282,5.03e-15,71;UBERON:0004290,5.03e-15,71;UBERON:0009618,5.03e-15,71;UBERON:0003077,1.84e-14,72;UBERON:0007285,1.84e-14,72;UBERON:0000490,2.58e-14,148;UBERON:0007524,4.29e-14,73;UBERON:0001134,9.01e-13,62;UBERON:0002036,9.01e-13,62;UBERON:0003082,9.01e-13,62;UBERON:0000486,2.75e-12,83;UBERON:0002385,1.01e-11,64;UBERON:0001015,1.01e-11,64;UBERON:0000383,1.01e-11,64;UBERON:0005256,6.99e-11,122;UBERON:0003104,1.60e-10,160;UBERON:0009142,1.60e-10,160;UBERON:0001637,3.05e-10,42;UBERON:0003509,3.05e-10,42;UBERON:0004572,3.05e-10,42;UBERON:0003914,2.03e-09,117;UBERON:0004573,2.65e-09,33;UBERON:0004571,2.65e-09,33;UBERON:0002100,6.76e-09,199;UBERON:0007500,2.50e-08,59;UBERON:0001981,2.50e-08,59;UBERON:0004537,2.50e-08,59;UBERON:0006965,2.50e-08,59;UBERON:0002049,6.68e-08,78;UBERON:0007798,6.68e-08,78;UBERON:0000055,2.59e-07,68;UBERON:0000119,3.19e-07,309;UBERON:0000483,5.21e-07,306;UBERON:0004872,7.95e-07,83 | |||
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| |||
|short_description=p5@HMGA1 | |||
}} |
Latest revision as of 08:51, 18 September 2015
Short description: | p5@HMGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HMGA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_M23619_5end |
EntrezGene: | HMGA1 |
HGNC: | 5010 |
UniProt: | P17096 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.23e-23 | 250 |
epithelial cell | 1.06e-16 | 253 |
mesodermal cell | 3.00e-15 | 121 |
muscle precursor cell | 4.76e-15 | 58 |
myoblast | 4.76e-15 | 58 |
multi-potent skeletal muscle stem cell | 4.76e-15 | 58 |
muscle cell | 1.38e-14 | 55 |
smooth muscle cell | 2.17e-14 | 43 |
smooth muscle myoblast | 2.17e-14 | 43 |
electrically responsive cell | 4.05e-13 | 61 |
electrically active cell | 4.05e-13 | 61 |
vascular associated smooth muscle cell | 6.88e-12 | 32 |
migratory neural crest cell | 2.84e-09 | 41 |
ectodermal cell | 1.06e-07 | 72 |
squamous epithelial cell | 2.43e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 9.20e-24 | 239 |
cancer | 2.21e-21 | 235 |
organ system cancer | 2.99e-11 | 137 |
cell type cancer | 6.26e-11 | 143 |
carcinoma | 1.27e-10 | 106 |