FFCP PHASE1:Hg19::chr3:46069223..46069234,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2829 | |EntrezGene=2829 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1625 | |HGNC=1625 | ||
|TSSclassifier=strong | |||
|UniProt=P46094 | |UniProt=P46094 | ||
|association_with_transcript=0bp_to_ENST00000309285_5end | |association_with_transcript=0bp_to_ENST00000309285_5end | ||
|cluster_id=chr3:46069223..46069234,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_3_at_XCR1_5end | |description=CAGE_peak_3_at_XCR1_5end | ||
|id=chr3:46069223..46069234,- | |id=chr3:46069223..46069234,- | ||
|ontology_enrichment_celltype=CL:0002541!5.99e-15!3 | |ontology_enrichment_celltype=CL:0002541!5.99e-15!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.39e-55;3!CL:0000349;1.04e-15;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.40e-55,3;CL:0000349,9.50e-16,19 | |||
|ontology_enrichment_development_v019=UBERON:0004872;8.04e-24;7!UBERON:0003124;1.56e-19;1!UBERON:0006965;2.07e-10;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!5.99e-15!3;UBERON:0000920!5.99e-15!3;UBERON:0007023!3.29e-14!115;UBERON:0003124!4.75e-11!7;UBERON:0003408!5.89e-11!10;UBERON:0004177!2.16e-10!7;UBERON:0001829!8.44e-10!2;UBERON:0004921!1.07e-08!129;UBERON:0004185!1.07e-08!129;UBERON:0005409!2.02e-08!35;UBERON:0005631!3.28e-08!14;UBERON:0000158!3.28e-08!14;UBERON:0001007!2.17e-07!155;UBERON:0001555!2.17e-07!155;UBERON:0007026!2.17e-07!155;UBERON:0004119!2.81e-07!169;UBERON:0000925!2.81e-07!169;UBERON:0006595!2.81e-07!169;UBERON:0001044!4.14e-07!6;UBERON:0003293!4.14e-07!6;UBERON:0003294!4.14e-07!6;UBERON:0010047!4.14e-07!6;UBERON:0000167!4.14e-07!6;UBERON:0000160!6.47e-07!27;UBERON:0002106!9.83e-07!3;UBERON:0004854!9.83e-07!3;UBERON:0009034!9.83e-07!3;UBERON:0002095!9.83e-07!3;UBERON:0004782!9.83e-07!3;UBERON:0003281!9.83e-07!3;UBERON:0009664!9.83e-07!3;UBERON:0002296!9.83e-07!3;UBERON:0005602!9.83e-07!3;UBERON:0001179!9.83e-07!3;UBERON:0006293!9.83e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;2.39e-55;3!UBERON:0000920;2.39e-55;3!UBERON:0005631;1.97e-29;10!UBERON:0000158;1.97e-29;10!UBERON:0000478;4.58e-19;24!UBERON:0004177;2.90e-15;5!UBERON:0005057;2.90e-15;5!UBERON:0002370;2.85e-10;2!UBERON:0005058;2.85e-10;2!UBERON:0009113;2.85e-10;2!UBERON:0002106;2.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.40e-55,3;UBERON:0003124,5.24e-42,7;UBERON:0005631,1.37e-32,14;UBERON:0000158,1.37e-32,14;UBERON:0000478,4.16e-19,24;UBERON:0004177,3.66e-11,7;UBERON:0005057,3.66e-11,7;UBERON:0004923,8.46e-10,66;UBERON:0002106,2.79e-07,3;UBERON:0004854,2.79e-07,3;UBERON:0009034,2.79e-07,3;UBERON:0002095,2.79e-07,3;UBERON:0004782,2.79e-07,3;UBERON:0003281,2.79e-07,3;UBERON:0009664,2.79e-07,3;UBERON:0002296,2.79e-07,3;UBERON:0005602,2.79e-07,3;UBERON:0001179,2.79e-07,3;UBERON:0006293,2.79e-07,3;UBERON:0005409,8.20e-07,25 | |||
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| ||
|short_description=p3@XCR1 | |short_description=p3@XCR1 | ||
}} | }} |
Latest revision as of 09:48, 18 September 2015
Short description: | p3@XCR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_XCR1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000309285_5end |
EntrezGene: | XCR1 |
HGNC: | 1625 |
UniProt: | P46094 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.40e-55 | 3 |
extraembryonic cell | 9.50e-16 | 19 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.40e-55 | 3 |
chorion | 5.24e-42 | 7 |
extraembryonic membrane | 1.37e-32 | 14 |
membranous layer | 1.37e-32 | 14 |
extraembryonic structure | 4.16e-19 | 24 |
hemopoietic organ | 3.66e-11 | 7 |
immune organ | 3.66e-11 | 7 |
organ component layer | 8.46e-10 | 66 |
spleen | 2.79e-07 | 3 |
gastrointestinal system mesentery | 2.79e-07 | 3 |
stomach region | 2.79e-07 | 3 |
mesentery | 2.79e-07 | 3 |
gastrointestinal system serosa | 2.79e-07 | 3 |
mesentery of stomach | 2.79e-07 | 3 |
gut mesentery | 2.79e-07 | 3 |
dorsal mesentery | 2.79e-07 | 3 |
dorsal mesogastrium | 2.79e-07 | 3 |
peritoneal cavity | 2.79e-07 | 3 |
spleen primordium | 2.79e-07 | 3 |
gastrointestinal system | 8.20e-07 | 25 |