FFCP PHASE1:Hg19::chr10:50604121..50604142,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:50604121..50604142,-
|short_description=p1@DRGX
|description=CAGE_peak_1_at_DRGX_5end
|association_with_transcript=-135bp_to_ENST00000374139_5end
|Entrez...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=644168 | |EntrezGene=644168 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21536 | |HGNC=21536 | ||
|TSSclassifier=strong | |||
|UniProt=A6NNA5 | |UniProt=A6NNA5 | ||
|association_with_transcript=-135bp_to_ENST00000374139_5end | |||
|cluster_id=chr10:50604121..50604142,- | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_1_at_DRGX_5end | |||
|id=chr10:50604121..50604142,- | |||
|ontology_enrichment_celltype=CL:0000242!6.22e-11!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;3.35e-32;2!CL:0000242;3.35e-32;2!CL:0000312;1.63e-13;5!CL:0000333;2.09e-13;5!CL:0000240;2.02e-11;6!CL:0000311;2.02e-11;6!CL:0000079;2.02e-11;6!CL:0000237;2.02e-11;6!CL:0000362;6.55e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.35e-32,2;CL:0000312,1.63e-13,5;CL:0000240,2.02e-11,6;CL:0000311,2.02e-11,6;CL:0000079,2.02e-11,6;CL:0000237,2.02e-11,6;CL:0000036,2.02e-11,6;CL:0000357,2.02e-11,6;CL:0000114,2.02e-11,6;CL:0000362,6.55e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0006241;4.51e-46;3!UBERON:0003057;4.51e-46;3!CL:0000357;2.02e-11;6!CL:0000114;2.02e-11;6 | |||
|ontology_enrichment_disease=DOID:169!1.25e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:169;2.49e-11;6!DOID:171;3.77e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,2.49e-11,6;DOID:171,3.77e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0003076!7.27e-24!15;UBERON:0003057!7.27e-24!15;UBERON:0000073!2.34e-21!94;UBERON:0001016!2.34e-21!94;UBERON:0001049!4.67e-21!57;UBERON:0005068!4.67e-21!57;UBERON:0006241!4.67e-21!57;UBERON:0007135!4.67e-21!57;UBERON:0002298!2.00e-20!8;UBERON:0005743!1.00e-17!86;UBERON:0001017!8.30e-17!82;UBERON:0003075!3.96e-16!86;UBERON:0007284!3.96e-16!86;UBERON:0002346!3.25e-15!90;UBERON:0002240!3.41e-15!3;UBERON:0001896!9.06e-15!3;UBERON:0005290!9.06e-15!3;UBERON:0010096!9.06e-15!3;UBERON:0000988!1.98e-14!3;UBERON:0004733!2.07e-13!12;UBERON:0002028!2.07e-13!12;UBERON:0007277!2.07e-13!12;UBERON:0002616!2.21e-13!59;UBERON:0000955!1.90e-12!69;UBERON:0006238!1.90e-12!69;UBERON:0004732!2.49e-12!13;UBERON:0007023!2.98e-12!115;UBERON:0004121!6.25e-12!169;UBERON:0000924!1.59e-11!173;UBERON:0006601!1.59e-11!173;UBERON:0002148!4.84e-10!2;UBERON:0009662!4.84e-10!2;UBERON:0005174!2.73e-09!5;UBERON:0001137!2.73e-09!5;UBERON:0000013!4.47e-09!5;UBERON:0002410!4.47e-09!5;UBERON:0000033!1.66e-08!123;UBERON:0000153!6.24e-08!129;UBERON:0007811!6.24e-08!129;UBERON:0000200!4.87e-07!6;UBERON:0006331!5.82e-07!3;UBERON:0002780!6.57e-07!41;UBERON:0001890!6.57e-07!41;UBERON:0006240!6.57e-07!41;UBERON:0002020!9.20e-07!34;UBERON:0003528!9.20e-07!34;UBERON:0001893!9.36e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;4.51e-46;3!UBERON:0005174;4.51e-46;3!UBERON:0001137;4.51e-46;3!UBERON:0002298;3.93e-23;6!UBERON:0000988;5.47e-21;3!UBERON:0000013;2.09e-13;5!UBERON:0002410;2.09e-13;5!UBERON:0004733;6.59e-12;12!UBERON:0002028;6.59e-12;12!UBERON:0004732;4.87e-11;13!UBERON:0002148;7.49e-09;2!UBERON:0006331;7.49e-09;2!UBERON:0009662;7.49e-09;2!UBERON:0000010;7.50e-08;8!UBERON:0002680;1.25e-07;9!UBERON:0001895;1.25e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,3.06e-46,3;UBERON:0005174,3.06e-46,3;UBERON:0001137,3.06e-46,3;UBERON:0003076,5.32e-36,15;UBERON:0003057,5.32e-36,15;UBERON:0002298,3.93e-23,6;UBERON:0000988,5.47e-21,3;UBERON:0000013,2.09e-13,5;UBERON:0002410,2.09e-13,5;UBERON:0004733,6.59e-12,12;UBERON:0002028,6.59e-12,12;UBERON:0007277,6.59e-12,12;UBERON:0004732,4.87e-11,13;UBERON:0001016,5.67e-10,89;UBERON:0001049,2.35e-09,56;UBERON:0005068,2.35e-09,56;UBERON:0006241,2.35e-09,56;UBERON:0007135,2.35e-09,56;UBERON:0002148,6.94e-09,2;UBERON:0006331,6.94e-09,2;UBERON:0009662,6.94e-09,2;UBERON:0010371,1.13e-08,104;UBERON:0004121,7.37e-08,171;UBERON:0000924,7.37e-08,171;UBERON:0006601,7.37e-08,171;UBERON:0000010,7.51e-08,8;UBERON:0002680,1.25e-07,9;UBERON:0001895,1.25e-07,9;UBERON:0010092,1.25e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,3.10269035917318,0,0.173624994933292,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379864775735272,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55139547633861,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.1251909307065,0.573409195690071,0.554645257684261,1.42821726765182,0,0,0,0,0,13.1133773625927,262.886745900037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,2.48830904013189,12.1499652738469,0,0.157265941855896,11.7946409247375,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,1.2914249265598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0.0771741581079447,0,0,0,0,2.74831853960923,1.78227840196252,7.6078030965012,0,0,0.0644578879735772,0,0,0,0,0,0,0,1.26217249754548,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,3.10269035917318,0,0.173624994933292,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379864775735272,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55139547633861,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.1251909307065,0.573409195690071,0.554645257684261,1.42821726765182,0,0,0,0,0,13.1133773625927,262.886745900037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,2.48830904013189,12.1499652738469,0,0.157265941855896,11.7946409247375,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,1.2914249265598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0.0771741581079447,0,0,0,0,2.74831853960923,1.78227840196252,7.6078030965012,0,0,0.0644578879735772,0,0,0,0,0,0,0,1.26217249754548,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@DRGX | |||
}} | }} |
Latest revision as of 09:58, 18 September 2015
Short description: | p1@DRGX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DRGX_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -135bp_to_ENST00000374139_5end |
EntrezGene: | DRGX |
HGNC: | 21536 |
UniProt: | A6NNA5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.35e-32 | 2 |
keratinocyte | 1.63e-13 | 5 |
stratified squamous epithelial cell | 2.02e-11 | 6 |
keratin accumulating cell | 2.02e-11 | 6 |
stratified epithelial cell | 2.02e-11 | 6 |
keratinizing barrier epithelial cell | 2.02e-11 | 6 |
epithelial fate stem cell | 2.02e-11 | 6 |
stratified epithelial stem cell | 2.02e-11 | 6 |
surface ectodermal cell | 2.02e-11 | 6 |
epidermal cell | 6.55e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 3.06e-46 | 3 |
dorsal region element | 3.06e-46 | 3 |
dorsum | 3.06e-46 | 3 |
posterior neural tube | 5.32e-36 | 15 |
chordal neural plate | 5.32e-36 | 15 |
brainstem | 3.93e-23 | 6 |
pons | 5.47e-21 | 3 |
sympathetic nervous system | 2.09e-13 | 5 |
autonomic nervous system | 2.09e-13 | 5 |
segmental subdivision of hindbrain | 6.59e-12 | 12 |
hindbrain | 6.59e-12 | 12 |
presumptive hindbrain | 6.59e-12 | 12 |
segmental subdivision of nervous system | 4.87e-11 | 13 |
nervous system | 5.67e-10 | 89 |
neural tube | 2.35e-09 | 56 |
neural rod | 2.35e-09 | 56 |
future spinal cord | 2.35e-09 | 56 |
neural keel | 2.35e-09 | 56 |
locus ceruleus | 6.94e-09 | 2 |
brainstem nucleus | 6.94e-09 | 2 |
hindbrain nucleus | 6.94e-09 | 2 |
ecto-epithelium | 1.13e-08 | 104 |
ectoderm-derived structure | 7.37e-08 | 171 |
ectoderm | 7.37e-08 | 171 |
presumptive ectoderm | 7.37e-08 | 171 |
peripheral nervous system | 7.51e-08 | 8 |
regional part of metencephalon | 1.25e-07 | 9 |
metencephalon | 1.25e-07 | 9 |
future metencephalon | 1.25e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.49e-11 | 6 |
neuroectodermal tumor | 3.77e-07 | 10 |