FFCP PHASE1:Hg19::chr21:40032558..40032578,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2078 | |EntrezGene=2078 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3446 | |HGNC=3446 | ||
|TSSclassifier=strong | |||
|UniProt=P11308,B4DVX5 | |UniProt=P11308,B4DVX5 | ||
|association_with_transcript=12bp_to_ENST00000398919,NM_001243428,uc010gnw.2,uc010gnx.2_5end | |association_with_transcript=12bp_to_ENST00000398919,NM_001243428,uc010gnw.2,uc010gnx.2_5end | ||
|cluster_id=chr21:40032558..40032578,- | |||
|coexpression_cluster_id=C4077 | |coexpression_cluster_id=C4077 | ||
|description=CAGE_peak_5_at_ERG_5end | |description=CAGE_peak_5_at_ERG_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000153!1.63e-10!9;CL:0000447!1.63e-10!9;CL:0000667!1.21e-08!6;CL:0000058!1.21e-08!6;CL:0000138!1.21e-08!6 | |ontology_enrichment_celltype=CL:0000153!1.63e-10!9;CL:0000447!1.63e-10!9;CL:0000667!1.21e-08!6;CL:0000058!1.21e-08!6;CL:0000138!1.21e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000153;7.13e-42;9!CL:0000447;7.13e-42;9!CL:0000138;7.57e-33;6!CL:0000327;7.49e-25;15!CL:0000499;5.85e-13;28!CL:0000214;3.08e-11;3!CL:0000151;1.68e-08;36 | |ontology_enrichment_celltype_v019=CL:0000153;7.13e-42;9!CL:0000447;7.13e-42;9!CL:0000138;7.57e-33;6!CL:0000327;7.49e-25;15!CL:0000499;5.85e-13;28!CL:0000214;3.08e-11;3!CL:0000151;1.68e-08;36 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.67e-42,9;CL:0000447,3.67e-42,9;CL:0000058,5.48e-33,6;CL:0000138,5.48e-33,6;CL:0000327,5.06e-25,15;CL:0000499,4.78e-13,28;CL:0000214,2.26e-11,3;CL:0000151,5.74e-10,36 | |||
|ontology_enrichment_development_v019=UBERON:0010115;6.72e-09;1 | |ontology_enrichment_development_v019=UBERON:0010115;6.72e-09;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4235;6.72e-09;1 | |ontology_enrichment_disease_v019=DOID:4235;6.72e-09;1 | ||
|ontology_enrichment_disease_v019_2=DOID:4235,6.22e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.33e-20!115 | |ontology_enrichment_uberon=UBERON:0007023!5.33e-20!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;3.08e-11;3!UBERON:0007616;3.08e-11;3!UBERON:0002217;3.08e-11;3!UBERON:0002018;3.08e-11;3!UBERON:0002146;2.50e-09;1!UBERON:0005623;2.50e-09;1!UBERON:0002363;6.72e-09;1!UBERON:0004457;3.29e-08;9!UBERON:0000042;3.29e-08;9 | |ontology_enrichment_uberon_v019=UBERON:0006915;3.08e-11;3!UBERON:0007616;3.08e-11;3!UBERON:0002217;3.08e-11;3!UBERON:0002018;3.08e-11;3!UBERON:0002146;2.50e-09;1!UBERON:0005623;2.50e-09;1!UBERON:0002363;6.72e-09;1!UBERON:0004457;3.29e-08;9!UBERON:0000042;3.29e-08;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,2.26e-11,3;UBERON:0007616,2.26e-11,3;UBERON:0002217,2.26e-11,3;UBERON:0002018,2.26e-11,3;UBERON:0002146,2.82e-09,1;UBERON:0005623,2.82e-09,1;UBERON:0002363,9.17e-09,1;UBERON:0007645,9.17e-09,1;UBERON:0007647,9.17e-09,1;UBERON:0010115,9.17e-09,1 | |||
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| ||
|short_description=p5@ERG | |short_description=p5@ERG | ||
}} | }} |
Latest revision as of 10:32, 18 September 2015
Short description: | p5@ERG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ERG_5end |
Coexpression cluster: | C4077_aorta_Chondrocyte_colon_trachea_gastrointestinal_heart_synovial |
Association with transcript: | 12bp_to_ENST00000398919, NM_001243428, uc010gnw.2, uc010gnx.2_5end |
EntrezGene: | ERG |
HGNC: | 3446 |
UniProt: | P11308B4DVX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.67e-42 | 9 |
carbohydrate secreting cell | 3.67e-42 | 9 |
chondroblast | 5.48e-33 | 6 |
chondrocyte | 5.48e-33 | 6 |
extracellular matrix secreting cell | 5.06e-25 | 15 |
stromal cell | 4.78e-13 | 28 |
synovial cell | 2.26e-11 | 3 |
secretory cell | 5.74e-10 | 36 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 2.26e-11 | 3 |
layer of synovial tissue | 2.26e-11 | 3 |
synovial joint | 2.26e-11 | 3 |
synovial membrane of synovial joint | 2.26e-11 | 3 |
pulmonary valve | 2.82e-09 | 1 |
semi-lunar valve | 2.82e-09 | 1 |
dura mater | 9.17e-09 | 1 |
future meninx | 9.17e-09 | 1 |
ectomeninx | 9.17e-09 | 1 |
future dura mater | 9.17e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 6.22e-09 | 1 |