FFCP PHASE1:Hg19::chr17:80009748..80009808,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2873 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4549 | |||
|TSSclassifier=strong | |||
|UniProt=Q13098,C9JFE4,A8K070 | |||
|association_with_transcript=0bp_to_ENST00000306823,ENST00000320548,ENST00000355130,ENST00000392358,NM_004127,NM_212492,uc002kdk.1,uc002kdl.1,uc002kdm.1,uc002kdn.1,uc002kdo.1,uc010dij.1,uc010wvh.1_5end | |||
|cluster_id=chr17:80009748..80009808,+ | |||
|coexpression_cluster_id=C1671 | |||
|description=CAGE_peak_1_at_GPS1_5end | |||
|id=chr17:80009748..80009808,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.73e-26!248;CL:0000220!5.25e-26!246;CL:0000055!2.56e-20!180;CL:0000222!1.16e-17!119;CL:0000183!1.64e-16!59;CL:0000393!4.65e-15!60;CL:0000211!4.65e-15!60;CL:0000548!2.19e-14!679;CL:0000004!2.19e-14!679;CL:0000255!2.19e-14!679;CL:0000187!7.30e-14!54;CL:0000012!8.14e-14!682;CL:0000192!9.97e-14!42;CL:0000514!9.97e-14!42;CL:0000680!2.19e-13!57;CL:0000056!2.19e-13!57;CL:0000355!2.19e-13!57;CL:0000066!4.52e-13!254;CL:0000359!4.44e-11!32;CL:0000144!5.42e-11!625;CL:0000221!3.18e-08!71;CL:0000333!3.87e-08!41;CL:1000449!2.54e-07!16;CL:0000003!3.01e-07!722;CL:0002371!3.51e-07!591;CL:0000133!4.77e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.07e-10;32!CL:0000192;9.11e-10;43!CL:0000393;6.91e-08;61!CL:0000211;6.91e-08;61!CL:1000449;8.24e-08;15!CL:0000187;9.69e-08;55!CL:0002681;4.57e-07;12!CL:0002584;4.57e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.54e-26,250;CL:0000222,7.93e-18,121;CL:0000393,9.41e-15,61;CL:0000211,9.41e-15,61;CL:0000187,1.49e-13,55;CL:0000192,2.40e-13,43;CL:0000514,2.40e-13,43;CL:0000066,3.74e-13,253;CL:0000680,4.24e-13,58;CL:0000056,4.24e-13,58;CL:0000355,4.24e-13,58;CL:0000359,4.44e-11,32;CL:0000221,3.69e-08,72;CL:0000333,3.87e-08,41;CL:1000449,7.79e-08,15;CL:0002681,4.38e-07,12;CL:0002584,4.38e-07,12;CL:0000133,4.77e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000514;9.11e-10;43!CL:0000355;2.53e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.77e-18!312;UBERON:0000483!1.56e-17!309;UBERON:0004290!2.14e-16!70;UBERON:0005256!4.50e-16!143;UBERON:0000914!1.15e-15!83;UBERON:0002329!1.15e-15!83;UBERON:0003077!1.15e-15!83;UBERON:0003059!1.15e-15!83;UBERON:0007282!1.15e-15!83;UBERON:0009618!1.15e-15!83;UBERON:0007285!1.15e-15!83;UBERON:0000486!2.60e-15!82;UBERON:0000490!3.04e-15!138;UBERON:0003914!1.12e-14!118;UBERON:0001134!1.97e-13!61;UBERON:0002036!1.97e-13!61;UBERON:0003082!1.97e-13!61;UBERON:0000481!1.70e-12!347;UBERON:0003104!1.96e-12!238;UBERON:0009142!1.96e-12!238;UBERON:0002385!3.56e-12!63;UBERON:0001015!3.56e-12!63;UBERON:0000383!3.56e-12!63;UBERON:0004872!5.83e-12!84;UBERON:0000475!8.92e-12!365;UBERON:0001637!9.88e-12!42;UBERON:0003509!9.88e-12!42;UBERON:0004572!9.88e-12!42;UBERON:0002049!2.34e-11!79;UBERON:0007798!2.34e-11!79;UBERON:0002100!7.38e-11!216;UBERON:0001981!1.22e-10!60;UBERON:0007500!1.22e-10!60;UBERON:0004537!1.22e-10!60;UBERON:0006965!1.22e-10!60;UBERON:0000055!8.87e-10!69;UBERON:0000477!5.55e-09!286;UBERON:0004573!3.08e-08!33;UBERON:0004571!3.08e-08!33;UBERON:0000025!1.35e-07!194;UBERON:0001009!2.20e-07!113;UBERON:0004211!2.54e-07!16;UBERON:0001285!2.54e-07!16;UBERON:0007684!2.54e-07!16;UBERON:0003220!2.54e-07!16;UBERON:0004208!2.54e-07!16;UBERON:0004535!8.39e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;7.63e-09;74!UBERON:0001637;1.33e-08;42!UBERON:0003509;1.33e-08;42!UBERON:0004572;1.33e-08;42!UBERON:0007500;6.50e-08;56!UBERON:0001981;6.50e-08;56!UBERON:0004537;6.50e-08;56!UBERON:0006555;8.24e-08;15!UBERON:0004819;8.24e-08;15!UBERON:0001285;8.24e-08;15!UBERON:0007684;8.24e-08;15!UBERON:0000353;9.37e-08;15!UBERON:0004573;1.58e-07;33!UBERON:0004571;1.58e-07;33!UBERON:0001225;4.57e-07;12!UBERON:0008987;4.57e-07;12 | |||
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| |||
|short_description=p1@GPS1 | |||
}} |
Latest revision as of 10:59, 18 September 2015
Short description: | p1@GPS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPS1_5end |
Coexpression cluster: | C1671_Alveolar_Mesenchymal_Renal_Pericytes_Fibroblast_Placental_Smooth |
Association with transcript: | 0bp_to_ENST00000306823, ENST00000320548, ENST00000355130, ENST00000392358, NM_004127, NM_212492, uc002kdk.1, uc002kdl.1, uc002kdm.1, uc002kdn.1, uc002kdo.1, uc010dij.1, uc010wvh.1_5end |
EntrezGene: | GPS1 |
HGNC: | 4549 |
UniProt: | Q13098C9JFE4A8K070 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.54e-26 | 250 |
mesodermal cell | 7.93e-18 | 121 |
electrically responsive cell | 9.41e-15 | 61 |
electrically active cell | 9.41e-15 | 61 |
muscle cell | 1.49e-13 | 55 |
smooth muscle cell | 2.40e-13 | 43 |
smooth muscle myoblast | 2.40e-13 | 43 |
epithelial cell | 3.74e-13 | 253 |
muscle precursor cell | 4.24e-13 | 58 |
myoblast | 4.24e-13 | 58 |
multi-potent skeletal muscle stem cell | 4.24e-13 | 58 |
vascular associated smooth muscle cell | 4.44e-11 | 32 |
ectodermal cell | 3.69e-08 | 72 |
migratory neural crest cell | 3.87e-08 | 41 |
epithelial cell of nephron | 7.79e-08 | 15 |
kidney cortical cell | 4.38e-07 | 12 |
renal cortical epithelial cell | 4.38e-07 | 12 |
neurectodermal cell | 4.77e-07 | 59 |