FFCP PHASE2:Hg19::chr5:68530376..68530408,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1022 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:1778 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1022 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=1778 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P50613 | ||
|association_with_transcript=-213bp_to_NM_001799,uc003jvs.3,uc003jvt.3,uc003jvu.3,uc010ixd.1_5end | |association_with_transcript=-213bp_to_NM_001799,uc003jvs.3,uc003jvt.3,uc003jvu.3,uc010ixd.1_5end | ||
|cluster_id=chr5:68530376..68530408,+ | |cluster_id=chr5:68530376..68530408,+ | ||
Latest revision as of 12:48, 18 September 2015
| Short description: | p7@CDK7 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_7_at_CDK7_5end |
| Coexpression cluster: | C111_medulla_lung_trachea_testis_caudate_epididymis_throat |
| Association with transcript: | -213bp_to_NM_001799, uc003jvs.3, uc003jvt.3, uc003jvu.3, uc010ixd.1_5end |
| EntrezGene: | CDK7 |
| HGNC: | 1778 |
| UniProt: | P50613 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p7@CDK7 |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| crystallin accumulating cell | 1.13e-13 | 4 |
| vertebrate lens cell | 1.13e-13 | 4 |
| lens epithelial cell | 1.13e-13 | 4 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| testis | 1.26e-25 | 8 |
| male reproductive organ | 5.63e-19 | 11 |
| medulla oblongata | 6.76e-18 | 3 |
| myelencephalon | 6.76e-18 | 3 |
| future myelencephalon | 6.76e-18 | 3 |
| cuboidal epithelium | 1.13e-13 | 4 |
| transparent eye structure | 1.13e-13 | 4 |
| simple cuboidal epithelium | 1.13e-13 | 4 |
| cranial placode | 1.13e-13 | 4 |
| lens of camera-type eye | 1.13e-13 | 4 |
Showing 1 to 10 of 22 entries
