FFCP PHASE1:Hg19::chr1:169703213..169703227,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6401 | |EntrezGene=6401 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10718 | |HGNC=10718 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TI72,Q5TI75,Q5TI73,Q5TI74,P16581 | |UniProt=Q5TI72,Q5TI75,Q5TI73,Q5TI74,P16581 | ||
|association_with_transcript=0bp_to_ENST00000367779,ENST00000367780,ENST00000367781,ENST00000367782,NM_000450,uc001ggm.3_5end | |association_with_transcript=0bp_to_ENST00000367779,ENST00000367780,ENST00000367781,ENST00000367782,NM_000450,uc001ggm.3_5end | ||
|cluster_id=chr1:169703213..169703227,- | |||
|coexpression_cluster_id=C514 | |||
|description=CAGE_peak_1_at_SELE_5end | |description=CAGE_peak_1_at_SELE_5end | ||
|id=chr1:169703213..169703227,- | |id=chr1:169703213..169703227,- | ||
|ontology_enrichment_celltype=CL:0002139!4.11e-20!24;CL:0000115!3.57e-15!35;CL:0000071!5.08e-13!18;CL:0002546!5.08e-13!18;CL:0002078!2.74e-11!44;CL:0005020!3.95e-09!6;CL:0002138!3.95e-09!6;CL:0005022!3.95e-09!6;CL:1000413!6.53e-08!9;CL:0000213!1.28e-07!57;CL:0000215!1.28e-07!57 | |ontology_enrichment_celltype=CL:0002139!4.11e-20!24;CL:0000115!3.57e-15!35;CL:0000071!5.08e-13!18;CL:0002546!5.08e-13!18;CL:0002078!2.74e-11!44;CL:0005020!3.95e-09!6;CL:0002138!3.95e-09!6;CL:0005022!3.95e-09!6;CL:1000413!6.53e-08!9;CL:0000213!1.28e-07!57;CL:0000215!1.28e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.08e-21;24!CL:0000115;4.81e-13;36!CL:0000071;2.06e-12;18!CL:0002138;3.18e-12;6!CL:1000413;1.62e-10;9!CL:0002078;2.49e-08;45!CL:0002544;9.52e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,8.18e-22,24;CL:0000115,1.59e-15,36;CL:0000071,1.63e-12,18;CL:0002546,1.63e-12,18;CL:0005020,3.17e-12,6;CL:0002138,3.17e-12,6;CL:0005022,3.17e-12,6;CL:0002078,3.19e-11,45;CL:1000413,1.02e-10,9;CL:0000213,1.79e-07,58;CL:0000215,1.79e-07,58;CL:0002544,7.78e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.06e-12;18!CL:0005022;3.18e-12;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.77e-62!115;UBERON:0004111!4.54e-27!241;UBERON:0000477!1.46e-22!286;UBERON:0000025!2.17e-22!194;UBERON:0001049!8.99e-20!57;UBERON:0005068!8.99e-20!57;UBERON:0006241!8.99e-20!57;UBERON:0007135!8.99e-20!57;UBERON:0001017!3.87e-18!82;UBERON:0005743!1.01e-17!86;UBERON:0003075!3.53e-16!86;UBERON:0007284!3.53e-16!86;UBERON:0000055!4.02e-16!69;UBERON:0003080!1.25e-15!42;UBERON:0002616!2.33e-15!59;UBERON:0002780!6.06e-15!41;UBERON:0001890!6.06e-15!41;UBERON:0006240!6.06e-15!41;UBERON:0002346!7.96e-15!90;UBERON:0000073!1.16e-14!94;UBERON:0001016!1.16e-14!94;UBERON:0000955!4.29e-14!69;UBERON:0006238!4.29e-14!69;UBERON:0001986!5.08e-13!18;UBERON:0004638!5.08e-13!18;UBERON:0004852!5.08e-13!18;UBERON:0002049!1.69e-12!79;UBERON:0007798!1.69e-12!79;UBERON:0000468!8.39e-12!659;UBERON:0001893!1.22e-11!34;UBERON:0004872!1.38e-11!84;UBERON:0002020!1.48e-11!34;UBERON:0003528!1.48e-11!34;UBERON:0001981!1.83e-11!60;UBERON:0007500!1.83e-11!60;UBERON:0004537!1.83e-11!60;UBERON:0006965!1.83e-11!60;UBERON:0000483!1.84e-11!309;UBERON:0000467!3.90e-11!625;UBERON:0000119!4.22e-11!312;UBERON:0002791!4.70e-11!33;UBERON:0000480!4.79e-11!626;UBERON:0001009!5.77e-11!113;UBERON:0001869!2.92e-10!32;UBERON:0002465!6.07e-10!10;UBERON:0000487!9.05e-10!22;UBERON:0004535!2.47e-09!110;UBERON:0000153!3.93e-09!129;UBERON:0007811!3.93e-09!129;UBERON:0003056!5.42e-09!61;UBERON:0002298!2.30e-08!8;UBERON:0004121!2.45e-08!169;UBERON:0001473!2.92e-08!8;UBERON:0004536!2.92e-08!8;UBERON:0006558!2.92e-08!8;UBERON:0002619!3.70e-08!22;UBERON:0006914!4.77e-08!25;UBERON:0003915!6.53e-08!9;UBERON:0004700!6.53e-08!9;UBERON:0001917!6.53e-08!9;UBERON:0003914!8.35e-08!118;UBERON:0000924!8.36e-08!173;UBERON:0006601!8.36e-08!173;UBERON:0000033!9.65e-08!123;UBERON:0000956!1.37e-07!25;UBERON:0000203!1.37e-07!25;UBERON:0000922!2.44e-07!612;UBERON:0000481!7.85e-07!347;UBERON:0001950!7.91e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.06e-12;18!UBERON:0001986;2.06e-12;18!UBERON:0004852;2.06e-12;18!UBERON:0007023;2.45e-11;114!UBERON:0003915;1.62e-10;9!UBERON:0004700;1.62e-10;9!UBERON:0001917;1.62e-10;9!UBERON:0000487;1.45e-09;22!UBERON:0002465;2.89e-09;10!UBERON:0001473;7.09e-09;8!UBERON:0004536;7.09e-09;8!UBERON:0006558;7.09e-09;8!UBERON:0006914;4.79e-08;25!UBERON:0000349;4.23e-07;5!UBERON:0002298;9.46e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.96e-43,114;UBERON:0004111,6.37e-14,240;UBERON:0004638,1.63e-12,18;UBERON:0001986,1.63e-12,18;UBERON:0004852,1.63e-12,18;UBERON:0000055,6.17e-12,68;UBERON:0003915,1.02e-10,9;UBERON:0004700,1.02e-10,9;UBERON:0001917,1.02e-10,9;UBERON:0000487,1.20e-09,22;UBERON:0002049,1.95e-09,78;UBERON:0007798,1.95e-09,78;UBERON:0000025,2.50e-09,192;UBERON:0002465,2.88e-09,10;UBERON:0001009,5.73e-09,112;UBERON:0001473,7.06e-09,8;UBERON:0004536,7.06e-09,8;UBERON:0006558,7.06e-09,8;UBERON:0006914,4.10e-08,25;UBERON:0004872,1.10e-07,83;UBERON:0007500,1.40e-07,59;UBERON:0001981,1.40e-07,59;UBERON:0004537,1.40e-07,59;UBERON:0006965,1.40e-07,59;UBERON:0000349,2.53e-07,5;UBERON:0004535,3.30e-07,109 | |||
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| ||
|short_description=p1@SELE | |short_description=p1@SELE | ||
}} | }} |
Latest revision as of 13:36, 18 September 2015
Short description: | p1@SELE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SELE_5end |
Coexpression cluster: | C514_Lymphatic_Endothelial_mycosis_appendix_heart_CD14_migratory |
Association with transcript: | 0bp_to_ENST00000367779, ENST00000367780, ENST00000367781, ENST00000367782, NM_000450, uc001ggm.3_5end |
EntrezGene: | SELE |
HGNC: | 10718 |
UniProt: | Q5TI72Q5TI75Q5TI73Q5TI74P16581 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 8.18e-22 | 24 |
endothelial cell | 1.59e-15 | 36 |
blood vessel endothelial cell | 1.63e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.63e-12 | 18 |
lymphangioblast | 3.17e-12 | 6 |
endothelial cell of lymphatic vessel | 3.17e-12 | 6 |
vascular lymphangioblast | 3.17e-12 | 6 |
meso-epithelial cell | 3.19e-11 | 45 |
endothelial cell of artery | 1.02e-10 | 9 |
lining cell | 1.79e-07 | 58 |
barrier cell | 1.79e-07 | 58 |
aortic endothelial cell | 7.78e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.96e-43 | 114 |
anatomical conduit | 6.37e-14 | 240 |
blood vessel endothelium | 1.63e-12 | 18 |
endothelium | 1.63e-12 | 18 |
cardiovascular system endothelium | 1.63e-12 | 18 |
vessel | 6.17e-12 | 68 |
endothelial tube | 1.02e-10 | 9 |
arterial system endothelium | 1.02e-10 | 9 |
endothelium of artery | 1.02e-10 | 9 |
simple squamous epithelium | 1.20e-09 | 22 |
vasculature | 1.95e-09 | 78 |
vascular system | 1.95e-09 | 78 |
tube | 2.50e-09 | 192 |
lymphoid system | 2.88e-09 | 10 |
circulatory system | 5.73e-09 | 112 |
lymphatic vessel | 7.06e-09 | 8 |
lymph vasculature | 7.06e-09 | 8 |
lymphatic part of lymphoid system | 7.06e-09 | 8 |
squamous epithelium | 4.10e-08 | 25 |
splanchnic layer of lateral plate mesoderm | 1.10e-07 | 83 |
epithelial tube open at both ends | 1.40e-07 | 59 |
blood vessel | 1.40e-07 | 59 |
blood vasculature | 1.40e-07 | 59 |
vascular cord | 1.40e-07 | 59 |
limbic system | 2.53e-07 | 5 |
cardiovascular system | 3.30e-07 | 109 |