FFCP PHASE1:Hg19::chr1:54801518..54801529,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23648 | |EntrezGene=23648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15674 | |HGNC=15674 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=24bp_to_ENST00000528787_5end | |association_with_transcript=24bp_to_ENST00000528787_5end | ||
|cluster_id=chr1:54801518..54801529,- | |||
|description=CAGE_peak_4_at_SSBP3_5end | |description=CAGE_peak_4_at_SSBP3_5end | ||
|id=chr1:54801518..54801529,- | |id=chr1:54801518..54801529,- | ||
|ontology_enrichment_celltype=CL:0000359;5.86e-15;32!CL:0002595;2.27e-10;5!CL:0000192;5.52e-10;43!CL:0002494;7.33e-08;16 | |ontology_enrichment_celltype=CL:0000055!1.69e-38!180;CL:0000680!9.14e-27!57;CL:0000056!9.14e-27!57;CL:0000355!9.14e-27!57;CL:0000187!2.02e-25!54;CL:0000183!7.18e-25!59;CL:0000192!1.81e-21!42;CL:0000514!1.81e-21!42;CL:0000057!8.27e-21!75;CL:0000393!1.21e-20!60;CL:0000211!1.21e-20!60;CL:0000359!9.07e-18!32;CL:0000222!5.17e-17!119;CL:0000220!1.13e-12!246;CL:0002321!2.87e-12!248;CL:0002371!3.68e-12!591;CL:0000144!3.43e-11!625;CL:0002620!8.66e-10!23;CL:0002494!4.27e-08!16;CL:0000548!4.03e-07!679;CL:0000004!4.03e-07!679;CL:0000255!4.03e-07!679;CL:0000723!4.36e-07!436;CL:0000012!8.96e-07!682 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;5.86e-15;32!CL:0002595;2.27e-10;5!CL:0000192;5.52e-10;43!CL:0002494;7.33e-08;16 | ||
|ontology_enrichment_celltype_v019_2=CL:0000359,6.96e-16,32;CL:0000192,2.85e-13,43;CL:0000514,2.85e-13,43;CL:0000680,4.14e-13,58;CL:0000056,4.14e-13,58;CL:0000355,4.14e-13,58;CL:0000187,8.63e-13,55;CL:0000057,2.88e-12,76;CL:0000393,6.99e-11,61;CL:0000211,6.99e-11,61;CL:0002595,3.77e-10,5;CL:0000222,5.58e-08,121;CL:0002494,1.30e-07,16;CL:0000723,4.85e-07,433;CL:0002592,7.06e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;5.52e-10;43!CL:0000355;5.48e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004573;7.31e-14;33!UBERON:0004571;7.31e-14;33!UBERON:0001637;1.85e-10;42!UBERON:0003509;1.85e-10;42!UBERON:0004572;1.85e-10;42!UBERON:0003834;2.27e-10;5!UBERON:0001533;2.27e-10;5!UBERON:0003513;3.15e-07;7 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,5.48e-07,3;DOID:127,5.48e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.82e-29!83;UBERON:0002329!1.82e-29!83;UBERON:0003077!1.82e-29!83;UBERON:0003059!1.82e-29!83;UBERON:0007282!1.82e-29!83;UBERON:0009618!1.82e-29!83;UBERON:0007285!1.82e-29!83;UBERON:0004290!7.97e-28!70;UBERON:0000486!2.25e-26!82;UBERON:0001134!2.98e-24!61;UBERON:0002036!2.98e-24!61;UBERON:0003082!2.98e-24!61;UBERON:0002385!1.52e-23!63;UBERON:0001015!1.52e-23!63;UBERON:0000383!1.52e-23!63;UBERON:0005256!8.49e-19!143;UBERON:0003102!1.92e-16!95;UBERON:0001637!9.20e-16!42;UBERON:0003509!9.20e-16!42;UBERON:0004572!9.20e-16!42;UBERON:0004573!7.98e-15!33;UBERON:0004571!7.98e-15!33;UBERON:0000475!1.48e-14!365;UBERON:0004872!6.47e-13!84;UBERON:0002199!2.32e-12!45;UBERON:0002416!2.32e-12!45;UBERON:0001981!5.97e-12!60;UBERON:0007500!5.97e-12!60;UBERON:0004537!5.97e-12!60;UBERON:0006965!5.97e-12!60;UBERON:0000490!6.14e-12!138;UBERON:0002049!6.21e-12!79;UBERON:0007798!6.21e-12!79;UBERON:0002100!1.59e-11!216;UBERON:0003914!4.79e-11!118;UBERON:0000119!1.44e-10!312;UBERON:0004535!2.92e-10!110;UBERON:0000055!3.58e-10!69;UBERON:0003104!3.60e-10!238;UBERON:0009142!3.60e-10!238;UBERON:0002097!4.85e-10!40;UBERON:0000483!5.66e-10!309;UBERON:0000481!7.90e-10!347;UBERON:0001009!1.91e-09!113;UBERON:0000948!3.58e-07!24;UBERON:0005498!3.58e-07!24;UBERON:0004140!3.58e-07!24;UBERON:0009881!3.58e-07!24;UBERON:0004141!3.58e-07!24;UBERON:0003084!3.58e-07!24;UBERON:0007005!3.58e-07!24;UBERON:0004139!3.58e-07!24;UBERON:0004291!3.58e-07!24;UBERON:0000947!5.39e-07!21;UBERON:0010191!5.39e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.31e-14;33!UBERON:0004571;7.31e-14;33!UBERON:0001637;1.85e-10;42!UBERON:0003509;1.85e-10;42!UBERON:0004572;1.85e-10;42!UBERON:0003834;2.27e-10;5!UBERON:0001533;2.27e-10;5!UBERON:0003513;3.15e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.59e-16,33;UBERON:0004571,1.59e-16,33;UBERON:0001637,5.06e-15,42;UBERON:0003509,5.06e-15,42;UBERON:0004572,5.06e-15,42;UBERON:0007524,2.85e-14,73;UBERON:0000486,6.83e-14,83;UBERON:0002329,7.70e-14,71;UBERON:0003059,7.70e-14,71;UBERON:0007282,7.70e-14,71;UBERON:0004290,7.70e-14,71;UBERON:0009618,7.70e-14,71;UBERON:0003077,1.56e-13,72;UBERON:0007285,1.56e-13,72;UBERON:0007503,6.56e-13,78;UBERON:0001134,8.19e-12,62;UBERON:0002036,8.19e-12,62;UBERON:0003082,8.19e-12,62;UBERON:0002385,3.14e-11,64;UBERON:0001015,3.14e-11,64;UBERON:0000383,3.14e-11,64;UBERON:0003834,3.77e-10,5;UBERON:0001533,3.77e-10,5;UBERON:0004872,3.54e-09,83;UBERON:0000055,5.05e-09,68;UBERON:0007500,5.62e-09,59;UBERON:0001981,5.62e-09,59;UBERON:0004537,5.62e-09,59;UBERON:0006965,5.62e-09,59;UBERON:0002049,1.02e-08,78;UBERON:0007798,1.02e-08,78;UBERON:0004535,4.11e-08,109;UBERON:0001009,1.09e-07,112;UBERON:0003513,4.45e-07,7;UBERON:0003104,4.50e-07,160;UBERON:0009142,4.50e-07,160;UBERON:0003498,4.99e-07,5;UBERON:0005985,4.99e-07,5;UBERON:0002199,5.32e-07,46;UBERON:0002416,5.32e-07,46;UBERON:0001621,7.06e-07,3 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0.446961094427288,0,2.53299878168311,1.26343974685366,0.783556884599516,0.491467873003018,1.39560233594486,0,0,0.618831764800233,0.994192127183747,1.34465029290355,0.602694528023977,0.730310090387373,0.487932798790507,0,0.612002073732759,0,0,0,0,0,0,0,0,0,0,2.75826367343678,0.90361775633475,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.767175371061182,1.80719576192283,0,1.88300474649071,0,1.94653948121054,0.0945348171640679,0,0.175669571386252,0.130979075497713,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0.81014194788176,0.0892997282840798,0.22452937262617,0.225222960966644,0,0,0,0,0,1.74437620857014,0.993943903390637,0.633152558322899,1.32409180813219,1.72101972449288,1.06400514659507,1.12135520028461,1.06748995729705,0.24666754841716,1.24484414159907,0.404132016209064,0.980771418680752,0.908144565869588,0,0.234321431833797,1.5608003841516,2.85235910772225,1.79338416662161,0.939475989150119,0.809364721840658,0.702254033511242,1.22492502752936,0.368502951935304,1.75653827998801,1.18800285728205,0,3.64064544775211,2.87447256726495,0.505008341862199,0.750711119231785,3.04770527032601,1.31693286264251,0.919463387397059,0.150238058906597,0.226864366320042,0.358779271377724,0.427114777637135,1.05965950579781,2.40072876867522,0.92747276314595,0.772921620136887,0.37223371266318,0.843881661206331,1.16924406193438,2.27190396819703,0.736399189138395,1.45481451136931,0.355009592516614,0.302256294682921,0.339121184620975,0.57978255948989,0.545492241181669,1.72082757233402,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0.343135620597051,0.98775256867763,4.49607013030478,1.3068766413512,0.462942225792648,0.325808305310325,1.03993478527958,0,0,0.587043471179108,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.716468181622786,0,0,0,0,0,0,0,0.444485260045183,0.381988425558278,1.17217447210047,0,0,0.300343057843917,0,0.560655421726804,0.43596006883328,0.80672114403045,0.387815147273333,7.15312891703765,0,0.797814349754612,0,1.02882949704857,0,1.0656887160644,0.57191197463259,1.62786481617433,1.64648067356154,0.977208552881205,0.710783897485092,1.58390374586686,0.602878754119172,0,1.29964888536674,0,0,0,1.19812427745791,0,1.42636905040718,0.579125226670317,0.61642896765115,2.50685348535854,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,1.00034104211935,1.08506009479894,0,1.42743191037729,0.315404830067869,0.117141414992713,0.601892199455438,2.27407504055985,0,0,0.921845842708516,0.868836144680828,1.17480694477644,0.686286847621712,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0.160853921143607,0,1.07946785661859,0.710246901252508,1.64254312027618,1.55776328755086,0.929683027679674,0,0.200506470303285,0,1.14814448164607,0.910455840033585,0.655622074797121,0,0.385076685522074,2.35304930753057,0,0.527758144464379,0,0,0.431831832204279,0,0.541892875087706,0,0.254876273045038,0,0.895499018888713,0,0,0.512900250232778,0.328014645699706,1.62689197332152,0.103041011647722,0,0,2.29706215198469,0.650060246036521,0,3.0934629853479,0.462145851343933,0.767518373630648,0.413509717453592,0.966782203814463,0.870100163485371,0.767039646744908,0.534192213880424,0.495854746082934,0.768760269460425,0.638063562472921,0.708104465988849,5.11330104227014,0.31481234683064,2.0911118104818,1.84820148105653,3.72614221221915,0.869932992075073,1.66791797193528,0.429374660225974,0.372158369359667,0.632758849437452,0.190630193923825,0.511795582622668,0.42793898803392,7.00047145437061,3.13979456079692,0.179872457583315,0.823611089208164,0.706874414074119,3.841467149893,1.58510321173008,3.37006764991185,0.975267478179181,1.21856744815642,5.28250733783777,0.818999468447914,2.12108147930569,10.1707304958219,2.2054613741845,3.3171948762061,3.06915619677634,0.578775534266688,0.655894752046633,0.608731130888112,0.6196469961995,0.563391205064483,0.860468113224309,0.294747123039363,1.78335525740625,1.41904425628239,1.47775344708365,3.29294892959902,1.51789269506286,1.39973888097993,1.92444225451024,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0,0,0,0,0,0,0.779160935160341,0,0,0.398495976502139,0,0,0,0,0.933118762985422,0.0898683511473268,0,0,0.197286811273867,0,3.33410970433911,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74301541630384,0,0.230850775511391,0.683652335082007,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,1.39010475182674,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0,1.64450309576101,0.397429223405979,0.126621591911757,0,0.0801588202515337,0.213452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| ||
|short_description=p4@SSBP3 | |short_description=p4@SSBP3 | ||
}} | }} |
Latest revision as of 14:43, 18 September 2015
Short description: | p4@SSBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SSBP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 24bp_to_ENST00000528787_5end |
EntrezGene: | SSBP3 |
HGNC: | 15674 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 6.96e-16 | 32 |
smooth muscle cell | 2.85e-13 | 43 |
smooth muscle myoblast | 2.85e-13 | 43 |
muscle precursor cell | 4.14e-13 | 58 |
myoblast | 4.14e-13 | 58 |
multi-potent skeletal muscle stem cell | 4.14e-13 | 58 |
muscle cell | 8.63e-13 | 55 |
fibroblast | 2.88e-12 | 76 |
electrically responsive cell | 6.99e-11 | 61 |
electrically active cell | 6.99e-11 | 61 |
smooth muscle cell of the subclavian artery | 3.77e-10 | 5 |
mesodermal cell | 5.58e-08 | 121 |
cardiocyte | 1.30e-07 | 16 |
somatic stem cell | 4.85e-07 | 433 |
smooth muscle cell of the coronary artery | 7.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 5.48e-07 | 3 |
leiomyoma | 5.48e-07 | 3 |